Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-238 |
| Cow position: | chr7:29744779-29745015 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 101, 79 |
| Conread position: | 1-319 |
| Cow position: | chr7:45613705-45614036 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 71 |
| Conread position: | 1-391 |
| Cow position: | chr7:14136081-14136481 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 120, 346 |
| Conread position: | 1-392 |
| Cow position: | chr7:5305218-5305618 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 331 |
| Conread position: | 1-401 |
| Cow position: | chr7:21124901-21125326 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 120, 219 |
| Conread position: | 1-401 |
| Cow position: | chr7:34151713-34151299 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 1-401 |
| Cow position: | chr7:55535150-55535560 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-406 |
| Cow position: | chr7:24805718-24806137 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 123, 393 |
| Conread position: | 1-413 |
| Cow position: | chr7:27106986-27107416 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 1-416 |
| Cow position: | chr7:65870738-65871163 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 123, 249 |
| Conread position: | 1-419 |
| Cow position: | chr7:6722802-6722367 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-419 |
| Cow position: | chr7:34488685-34488253 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-421 |
| Cow position: | chr7:59085696-59085286 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 101, 251 |
| Conread position: | 1-423 |
| Cow position: | chr7:60727687-60728122 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 123, 346 |
| Conread position: | 1-425 |
| Cow position: | chr7:4152999-4153433 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 292 |
| Conread position: | 1-427 |
| Cow position: | chr7:195135-195572 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 67 |
| Conread position: | 2-401 |
| Cow position: | chr7:11420812-11421226 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 122, 331 |
| Conread position: | 2-419 |
| Cow position: | chr7:34414287-34414719 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 289 |
| Conread position: | 3-331 |
| Cow position: | chr7:52762882-52763218 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 129, 185 |
| Conread position: | 3-352 |
| Cow position: | chr7:1442068-1442433 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 3-376 |
| Cow position: | chr7:1331647-1332035 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-391 |
| Cow position: | chr7:65813605-65813200 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-413 |
| Cow position: | chr7:547605-547195 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 138, 110 |
| Conread position: | 3-418 |
| Cow position: | chr7:7277176-7276744 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 3-418 |
| Cow position: | chr7:20796691-20797116 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 110, 93 |
| Conread position: | 3-418 |
| Cow position: | chr7:34415587-34416015 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 122, 257 |
| Conread position: | 3-419 |
| Cow position: | chr7:5260174-5260601 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 3-419 |
| Cow position: | chr7:8338146-8337716 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 110, 344 |
| Conread position: | 3-419 |
| Cow position: | chr7:11461369-11461794 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 110, 58 |
| Conread position: | 3-419 |
| Cow position: | chr7:26927404-26927838 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr7:37165629-37165204 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 286 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 110, 324 |
| Conread position: | 3-419 |
| Cow position: | chr7:55039711-55040144 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 110, 186 |
| Conread position: | 3-419 |
| Cow position: | chr7:58336255-58336685 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 3-429 |
| Cow position: | chr7:33065945-33066379 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 4-419 |
| Cow position: | chr7:45170305-45169873 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 18-401 |
| Cow position: | chr7:8142219-8142616 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 12, 330 |
| Conread position: | 18-403 |
| Cow position: | chr7:39794610-39794206 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 12, 275 |
| Conread position: | 18-419 |
| Cow position: | chr7:27712152-27711744 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 18-421 |
| Cow position: | chr7:67669792-67669380 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 20-375 |
| Cow position: | chr7:48637469-48637104 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 227 |
| Conread position: | 20-419 |
| Cow position: | chr7:64012175-64011759 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 93, 264 |
| Conread position: | 20-419 |
| Cow position: | chr7:64354768-64354352 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 93, 412 |
| Conread position: | 22-381 |
| Cow position: | chr7:39531244-39531608 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 109, 10 |
| Conread position: | 23-385 |
| Cow position: | chr7:68853222-68853596 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 23-401 |
| Cow position: | chr7:21989382-21988989 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 101, 324 |
| Conread position: | 33-357 |
| Cow position: | chr7:18934937-18935277 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 138 |
| Conread position: | 33-375 |
| Cow position: | chr7:21872800-21872451 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 71, 112 |
| Conread position: | 33-394 |
| Cow position: | chr7:1002034-1002388 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 85, 146 |
| Conread position: | 33-424 |
| Cow position: | chr7:24708084-24708494 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 94, 46 |
| Conread position: | 34-419 |
| Cow position: | chr7:63388734-63388367 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 188, 92 |
| Conread position: | 39-391 |
| Cow position: | chr7:39095756-39096126 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 39-419 |
| Cow position: | chr7:29473175-29472791 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 107 |
| Conread position: | 39-429 |
| Cow position: | chr7:26456507-26456914 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 170 |
Show alignments to all cow chromosomes.