Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-274 |
| Cow position: | chr9:1991929-1992217 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-304 |
| Cow position: | chr9:22655420-22655102 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 290 |
| Conread position: | 1-381 |
| Cow position: | chr9:3545434-3545037 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 99, 172 |
| Conread position: | 1-391 |
| Cow position: | chr9:30674677-30674270 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-392 |
| Cow position: | chr9:7059456-7059864 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 112, 106 |
| Conread position: | 1-392 |
| Cow position: | chr9:10856626-10856217 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 120, 66 |
| Conread position: | 1-412 |
| Cow position: | chr9:16178201-16177773 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-423 |
| Cow position: | chr9:31810185-31809753 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 281 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 123, 342 |
| Conread position: | 1-429 |
| Cow position: | chr9:4980861-4980447 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 130, 174 |
| Conread position: | 1-429 |
| Cow position: | chr9:43302613-43303057 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 123, 373 |
| Conread position: | 2-401 |
| Cow position: | chr9:7005323-7004919 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 119, 274 |
| Conread position: | 2-401 |
| Cow position: | chr9:28658444-28658859 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 122, 70 |
| Conread position: | 3-263 |
| Cow position: | chr9:30282406-30282680 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 3-302 |
| Cow position: | chr9:2873078-2872774 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 110, 89 |
| Conread position: | 3-364 |
| Cow position: | chr9:15053278-15053654 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 338 |
| Conread position: | 3-369 |
| Cow position: | chr9:3311223-3310841 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-376 |
| Cow position: | chr9:14002644-14002258 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-376 |
| Cow position: | chr9:30829356-30828971 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-376 |
| Cow position: | chr9:44168194-44167812 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 110, 93 |
| Conread position: | 3-391 |
| Cow position: | chr9:56301836-56302240 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 3-392 |
| Cow position: | chr9:10567761-10568143 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 93, 141 |
| Conread position: | 3-419 |
| Cow position: | chr9:2213746-2213319 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 326 |
| Conread position: | 3-419 |
| Cow position: | chr9:2485013-2485442 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 305 |
| Conread position: | 3-419 |
| Cow position: | chr9:2681179-2680746 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 286 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 110, 288 |
| Conread position: | 3-419 |
| Cow position: | chr9:34240495-34240927 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 357 |
| Conread position: | 3-419 |
| Cow position: | chr9:44203465-44203897 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 110, 86 |
| Conread position: | 3-419 |
| Cow position: | chr9:45876124-45875691 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr9:47044552-47044142 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 275 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 254, 89 |
| Conread position: | 3-425 |
| Cow position: | chr9:11440072-11440514 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 106, 168 |
| Conread position: | 4-418 |
| Cow position: | chr9:2526892-2526465 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 120, 235 |
| Conread position: | 4-419 |
| Cow position: | chr9:48795689-48796121 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 5-330 |
| Cow position: | chr9:18539266-18538928 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 334 |
| Conread position: | 15-376 |
| Cow position: | chr9:60324394-60324766 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 35, 205 |
| Conread position: | 17-345 |
| Cow position: | chr9:27782298-27782644 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 17-374 |
| Cow position: | chr9:52913810-52914173 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 18-365 |
| Cow position: | chr9:6251862-6251497 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-401 |
| Cow position: | chr9:18507235-18507634 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 12, 331 |
| Conread position: | 18-425 |
| Cow position: | chr9:5627410-5626982 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-425 |
| Cow position: | chr9:59480257-59480683 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 20-391 |
| Cow position: | chr9:1063113-1063499 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 82, 57 |
| Conread position: | 20-401 |
| Cow position: | chr9:2288546-2288944 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 20-418 |
| Cow position: | chr9:38678716-38678308 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 104, 69 |
| Conread position: | 20-419 |
| Cow position: | chr9:1741265-1741664 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 106, 256 |
| Conread position: | 20-429 |
| Cow position: | chr9:1983407-1982985 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 220 |
| Conread position: | 21-365 |
| Cow position: | chr9:24723362-24723011 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 22-401 |
| Cow position: | chr9:27037697-27037301 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 102, 220 |
| Conread position: | 23-391 |
| Cow position: | chr9:10939309-10938926 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 64, 325 |
| Conread position: | 34-375 |
| Cow position: | chr9:5573426-5573782 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 283 |
| Conread position: | 34-391 |
| Cow position: | chr9:28024383-28024010 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 90, 278 |
| Conread position: | 39-419 |
| Cow position: | chr9:59196423-59196030 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 80, 307 |
| Conread position: | 44-365 |
| Cow position: | chr9:56042426-56042739 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 68-421 |
| Cow position: | chr9:19308886-19308535 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 70-419 |
| Cow position: | chr9:55315755-55316120 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 253 |
| Conread position: | 129-429 |
| Cow position: | chr9:35681874-35681572 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 129-429 |
| Cow position: | chr9:35708040-35707738 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 133-398 |
| Cow position: | chr9:36316769-36316514 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 207, 140 |
Show alignments to all cow chromosomes.