Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-180 |
| Cow position: | chrX:10823617-10823801 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 1-284 |
| Cow position: | chrX:21581957-21581659 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-382 |
| Cow position: | chrX:15122647-15123040 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 123, 258 |
| Conread position: | 1-391 |
| Cow position: | chrX:5247908-5247504 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 120, 290 |
| Conread position: | 1-401 |
| Cow position: | chrX:13406771-13407181 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 120, 198 |
| Conread position: | 1-401 |
| Cow position: | chrX:23279541-23279128 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 95 |
| Conread position: | 1-414 |
| Cow position: | chrX:23021830-23021402 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 1-414 |
| Cow position: | chrX:24166765-24167163 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 46 |
| Conread position: | 1-419 |
| Cow position: | chrX:21492684-21492248 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-429 |
| Cow position: | chrX:23327287-23327744 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 125, 45 |
| Conread position: | 1-429 |
| Cow position: | chrX:30181410-30181855 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 2-305 |
| Cow position: | chrX:42043119-42043428 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 113, 203 |
| Conread position: | 2-391 |
| Cow position: | chrX:21414108-21413709 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 122, 60 |
| Conread position: | 3-376 |
| Cow position: | chrX:11146824-11147212 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 75, 346 |
| Conread position: | 3-377 |
| Cow position: | chrX:2560435-2560822 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-382 |
| Cow position: | chrX:29171268-29171660 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 110, 345 |
| Conread position: | 3-391 |
| Cow position: | chrX:14461831-14461426 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 110, 219 |
| Conread position: | 3-391 |
| Cow position: | chrX:16045484-16045086 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 110, 344 |
| Conread position: | 3-391 |
| Cow position: | chrX:16781798-16781397 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 121, 287 |
| Conread position: | 3-412 |
| Cow position: | chrX:35532369-35531949 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 110, 45 |
| Conread position: | 3-413 |
| Cow position: | chrX:3082625-3083048 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 283 |
| Conread position: | 3-419 |
| Cow position: | chrX:2047598-2047175 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 338 |
| Conread position: | 3-419 |
| Cow position: | chrX:3360335-3359911 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 3-419 |
| Cow position: | chrX:3418704-3419137 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 3-419 |
| Cow position: | chrX:5321199-5321632 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 64 |
| Conread position: | 3-419 |
| Cow position: | chrX:8481964-8481535 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 110, 206 |
| Conread position: | 3-419 |
| Cow position: | chrX:9010846-9010419 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 288 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 110, 236 |
| Conread position: | 3-419 |
| Cow position: | chrX:12359403-12358970 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chrX:14597369-14596939 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 284 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 110, 344 |
| Conread position: | 3-419 |
| Cow position: | chrX:15261104-15261529 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 115, 187 |
| Conread position: | 3-419 |
| Cow position: | chrX:17054083-17053642 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 110, 339 |
| Conread position: | 3-419 |
| Cow position: | chrX:20741115-20741547 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 110, 219 |
| Conread position: | 3-419 |
| Cow position: | chrX:27304455-27304032 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 110, 168 |
| Conread position: | 3-419 |
| Cow position: | chrX:28753824-28754257 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 3-419 |
| Cow position: | chrX:29094802-29095235 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chrX:29911847-29911418 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 121, 325 |
| Conread position: | 3-419 |
| Cow position: | chrX:32064655-32065082 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 110, 146 |
| Conread position: | 3-419 |
| Cow position: | chrX:37851658-37851226 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 110, 219 |
| Conread position: | 3-419 |
| Cow position: | chrX:37945007-37945417 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 3-419 |
| Cow position: | chrX:37950939-37950531 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 3-421 |
| Cow position: | chrX:37814663-37814228 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 3-422 |
| Cow position: | chrX:7754419-7753983 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-422 |
| Cow position: | chrX:31495252-31494812 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 4-419 |
| Cow position: | chrX:22126262-22126685 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 235 |
| Conread position: | 4-419 |
| Cow position: | chrX:23134110-23133689 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 284 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 114, 191 |
| Conread position: | 5-412 |
| Cow position: | chrX:27591510-27591927 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 119, 235 |
| Conread position: | 15-401 |
| Cow position: | chrX:7552304-7552708 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 270 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:32333214-32332819 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 18-401 |
| Cow position: | chrX:20725470-20725071 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 12, 76 |
| Conread position: | 18-401 |
| Cow position: | chrX:23388048-23388449 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 12, 155 |
| Conread position: | 18-419 |
| Cow position: | chrX:515008-514597 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 18-419 |
| Cow position: | chrX:22810395-22809978 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 12, 331 |
| Conread position: | 18-419 |
| Cow position: | chrX:23395106-23394688 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-425 |
| Cow position: | chrX:12464507-12464079 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 19-357 |
| Cow position: | chrX:11991391-11991742 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 20-391 |
| Cow position: | chrX:10867356-10867738 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 101, 150 |
| Conread position: | 20-392 |
| Cow position: | chrX:23384056-23384441 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 20-413 |
| Cow position: | chrX:26444043-26443638 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 105, 284 |
| Conread position: | 20-418 |
| Cow position: | chrX:24731146-24730731 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 20-419 |
| Cow position: | chrX:2487148-2486736 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 20-419 |
| Cow position: | chrX:30167578-30167992 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 93, 328 |
| Conread position: | 20-425 |
| Cow position: | chrX:22818570-22818152 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 93, 340 |
| Conread position: | 22-401 |
| Cow position: | chrX:9095140-9094747 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 102, 325 |
| Conread position: | 23-401 |
| Cow position: | chrX:29098918-29098534 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 104, 147 |
| Conread position: | 25-418 |
| Cow position: | chrX:9138626-9139038 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 90, 19 |
| Conread position: | 32-391 |
| Cow position: | chrX:11458328-11458693 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 92, 8 |
| Conread position: | 33-375 |
| Cow position: | chrX:26848159-26847806 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 158 |
| Conread position: | 33-376 |
| Cow position: | chrX:16854875-16855221 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 108, 80 |
| Conread position: | 33-413 |
| Cow position: | chrX:26341713-26342097 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 39-419 |
| Cow position: | chrX:15176960-15177349 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 65, 286 |
| Conread position: | 41-334 |
| Cow position: | chrX:23925571-23925868 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 42-394 |
| Cow position: | chrX:16291212-16291556 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 6 |
| Conread position: | 42-420 |
| Cow position: | chrX:25448986-25448594 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 190 |
| Conread position: | 55-403 |
| Cow position: | chrX:10707169-10706821 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 124 |
| Conread position: | 115-423 |
| Cow position: | chrX:5852743-5853047 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 18 |
Show alignments to all cow chromosomes.