Non-Coding RNA Search

Cow genome map


           Conread name:
           rlin40_n18.y1
        

               Conread position:
               1-134
               

               Cow position:
               chr1:72684735-72684605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               105, 53
               

               Conread position:
               1-138
               

               Cow position:
               chr1:71796272-71796409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-144
               

               Cow position:
               chr1:42541636-42541495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               105, 51
               

               Conread position:
               1-146
               

               Cow position:
               chr1:54156696-54156835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-146
               

               Cow position:
               chr1:61542880-61543021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-146
               

               Cow position:
               chr1:81580216-81580072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               54, 118
               

               Conread position:
               1-153
               

               Cow position:
               chr1:45285701-45285546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               109, 66
               

               Conread position:
               1-157
               

               Cow position:
               chr1:6826258-6826405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-160
               

               Cow position:
               chr1:261441-261598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               147, 62
               

               Conread position:
               1-160
               

               Cow position:
               chr1:89785948-89785792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               105, 61
               

               Conread position:
               1-161
               

               Cow position:
               chr1:22394841-22394674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               1-173
               

               Cow position:
               chr1:64572553-64572381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               1-174
               

               Cow position:
               chr1:62519401-62519224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               102, 28
               

               Conread position:
               1-175
               

               Cow position:
               chr1:74927922-74927746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-177
               

               Cow position:
               chr1:78838833-78838662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               111, 11
               

               Conread position:
               1-178
               

               Cow position:
               chr1:22192807-22192625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               71, 87
               

               Conread position:
               1-178
               

               Cow position:
               chr1:87197858-87197689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-178
               

               Cow position:
               chr1:87440506-87440330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               143, 62
               

               Conread position:
               1-178
               

               Cow position:
               chr1:97696785-97696602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-180
               

               Cow position:
               chr1:43311734-43311915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               105, 58
               

               Conread position:
               1-181
               

               Cow position:
               chr1:85550040-85550219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               103, 62
               

               Conread position:
               1-188
               

               Cow position:
               chr1:88913358-88913168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-188
               

               Cow position:
               chr1:89448938-89448751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               105, 41
               

               Conread position:
               1-190
               

               Cow position:
               chr1:23512621-23512806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-191
               

               Cow position:
               chr1:93554874-93554687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-195
               

               Cow position:
               chr1:7609658-7609460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               105, 55
               

               Conread position:
               1-199
               

               Cow position:
               chr1:38753961-38753753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               106, 57
               

               Conread position:
               1-204
               

               Cow position:
               chr1:22525916-22525716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               106, 65
               

               Conread position:
               1-204
               

               Cow position:
               chr1:55428918-55429124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               21, 69
               

               Conread position:
               1-204
               

               Cow position:
               chr1:80631737-80631534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               11, 55
               

               Conread position:
               1-204
               

               Cow position:
               chr1:87095176-87095399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               54, 221
               

               Conread position:
               1-205
               

               Cow position:
               chr1:31272404-31272609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               106, 60
               

               Conread position:
               1-206
               

               Cow position:
               chr1:182842-182643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               148, 44
               

               Conread position:
               1-207
               

               Cow position:
               chr1:101632299-101632511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               105, 61
               

               Conread position:
               1-210
               

               Cow position:
               chr1:42545741-42545959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               54, 64
               

               Conread position:
               1-214
               

               Cow position:
               chr1:20667704-20667921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-217
               

               Cow position:
               chr1:65318613-65318399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-219
               

               Cow position:
               chr1:86579003-86578764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               106, 66
               

               Conread position:
               1-220
               

               Cow position:
               chr1:31607850-31608084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               74, 53
               

               Conread position:
               1-220
               

               Cow position:
               chr1:59518960-59518736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               110, 62
               

               Conread position:
               1-221
               

               Cow position:
               chr1:42398153-42398383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               47, 75
               

               Conread position:
               1-223
               

               Cow position:
               chr1:33206843-33207063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               145, 29
               

               Conread position:
               1-223
               

               Cow position:
               chr1:43703447-43703226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-226
               

               Cow position:
               chr1:724778-724543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-227
               

               Cow position:
               chr1:83072479-83072251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               153, 64
               

               Conread position:
               1-229
               

               Cow position:
               chr1:82443416-82443651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               103, 62
               

               Conread position:
               1-233
               

               Cow position:
               chr1:51654462-51654212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1-234
               

               Cow position:
               chr1:24542532-24542781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               62, 42
               

               Conread position:
               1-234
               

               Cow position:
               chr1:94261574-94261348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               142, 39
               

               Conread position:
               1-237
               

               Cow position:
               chr1:28563528-28563771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 65
               

               Conread position:
               1-237
               

               Cow position:
               chr1:46030323-46030555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               114, 54
               

               Conread position:
               1-237
               

               Cow position:
               chr1:63138879-63138636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               96, 66
               

               Conread position:
               1-240
               

               Cow position:
               chr1:101867388-101867150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               146, 53
               

               Conread position:
               1-244
               

               Cow position:
               chr1:5423698-5423944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               14, 53
               

               Conread position:
               1-244
               

               Cow position:
               chr1:68863073-68862826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               109, 65
               

               Conread position:
               1-244
               

               Cow position:
               chr1:71643625-71643873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               105, 61
               

               Conread position:
               1-244
               

               Cow position:
               chr1:95654675-95654925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               118, 65
               

               Conread position:
               1-247
               

               Cow position:
               chr1:16961972-16962226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-248
               

               Cow position:
               chr1:98311108-98310847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 60
               

               Conread position:
               1-249
               

               Cow position:
               chr1:19885421-19885170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               109, 41
               

               Conread position:
               1-249
               

               Cow position:
               chr1:74955979-74956238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-250
               

               Cow position:
               chr1:77502747-77502995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               11, 52
               

               Conread position:
               1-252
               

               Cow position:
               chr1:8287592-8287831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               124, 54
               

               Conread position:
               1-253
               

               Cow position:
               chr1:49433226-49433483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-255
               

               Cow position:
               chr1:7971450-7971210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               22, 55
               

               Conread position:
               1-257
               

               Cow position:
               chr1:34771465-34771726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 54
               

               Conread position:
               1-257
               

               Cow position:
               chr1:43872281-43872553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               208
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               74, 253
               

               Conread position:
               1-257
               

               Cow position:
               chr1:49317458-49317735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-258
               

               Cow position:
               chr1:90976050-90976307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               105, 59
               

               Conread position:
               1-264
               

               Cow position:
               chr1:89076595-89076865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               63, 77
               

               Conread position:
               1-264
               

               Cow position:
               chr1:89381313-89381049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               105, 47
               

               Conread position:
               1-265
               

               Cow position:
               chr1:64804064-64804338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 62
               

               Conread position:
               1-266
               

               Cow position:
               chr1:31348399-31348672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               205
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-266
               

               Cow position:
               chr1:43447791-43448055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 11
               

               Conread position:
               1-266
               

               Cow position:
               chr1:78809914-78809652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 58
               

               Conread position:
               1-267
               

               Cow position:
               chr1:3429471-3429741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               45, 82
               

               Conread position:
               1-267
               

               Cow position:
               chr1:43389010-43389280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 55
               

               Conread position:
               1-267
               

               Cow position:
               chr1:79278408-79278674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               210
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               105, 50
               

               Conread position:
               1-272
               

               Cow position:
               chr1:10655520-10655240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               106, 46
               

               Conread position:
               1-273
               

               Cow position:
               chr1:64189539-64189264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               106, 55
               

               Conread position:
               1-273
               

               Cow position:
               chr1:76096477-76096201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               110, 48
               

               Conread position:
               1-274
               

               Cow position:
               chr1:26729756-26729489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 65
               

               Conread position:
               1-274
               

               Cow position:
               chr1:29648368-29648643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               128, 66
               

               Conread position:
               1-274
               

               Cow position:
               chr1:40531065-40531348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               216
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               54, 21
               

               Conread position:
               1-275
               

               Cow position:
               chr1:7443014-7442745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               105, 38
               

               Conread position:
               1-275
               

               Cow position:
               chr1:44507011-44506728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 55
               

               Conread position:
               1-275
               

               Cow position:
               chr1:62732611-62732335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               153, 66
               

               Conread position:
               1-276
               

               Cow position:
               chr1:51445924-51445638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 27
               

               Conread position:
               1-276
               

               Cow position:
               chr1:70435036-70434751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               143, 18
               

               Conread position:
               1-278
               

               Cow position:
               chr1:88618634-88618349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               1-278
               

               Cow position:
               chr1:97611622-97611896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               212
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               138, 53
               

               Conread position:
               1-281
               

               Cow position:
               chr1:45555404-45555116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               1-281
               

               Cow position:
               chr1:59650308-59650020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               105, 48
               

               Conread position:
               1-282
               

               Cow position:
               chr1:3244889-3244603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               221
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               10, 63
               

               Conread position:
               1-283
               

               Cow position:
               chr1:24534216-24534491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               105, 53
               

               Conread position:
               1-283
               

               Cow position:
               chr1:45019763-45020051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 70
               

               Conread position:
               1-283
               

               Cow position:
               chr1:47233440-47233723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-283
               

               Cow position:
               chr1:57395898-57396177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-283
               

               Cow position:
               chr1:57635500-57635219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-283
               

               Cow position:
               chr1:68951665-68951384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 54
               

               Conread position:
               1-283
               

               Cow position:
               chr1:70538649-70538355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               217
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               109, 50
               

               Conread position:
               1-283
               

               Cow position:
               chr1:93528735-93528442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 16
               

               Conread position:
               1-284
               

               Cow position:
               chr1:1916189-1916485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               106, 66
               

               Conread position:
               1-284
               

               Cow position:
               chr1:36932192-36931910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 20
               

               Conread position:
               1-284
               

               Cow position:
               chr1:37706932-37707218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 54
               

               Conread position:
               1-284
               

               Cow position:
               chr1:42138896-42138616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               145, 54
               

               Conread position:
               1-284
               

               Cow position:
               chr1:68855203-68854926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               144, 40
               

               Conread position:
               1-284
               

               Cow position:
               chr1:71136191-71135904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               91, 59
               

               Conread position:
               1-284
               

               Cow position:
               chr1:78791266-78791556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-284
               

               Cow position:
               chr1:81563783-81563484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 62
               

               Conread position:
               1-284
               

               Cow position:
               chr1:91800561-91800857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 54
               

               Conread position:
               1-284
               

               Cow position:
               chr1:95215152-95215435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 53
               

               Conread position:
               1-287
               

               Cow position:
               chr1:89485618-89485339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               225
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               11, 63
               

               Conread position:
               1-288
               

               Cow position:
               chr1:39426967-39427234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 54
               

               Conread position:
               1-290
               

               Cow position:
               chr1:52995062-52994769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 54
               

               Conread position:
               1-290
               

               Cow position:
               chr1:53520949-53520651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-290
               

               Cow position:
               chr1:69694955-69695264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               240
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               1-291
               

               Cow position:
               chr1:1802176-1801888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               223
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               107, 13
               

               Conread position:
               1-291
               

               Cow position:
               chr1:13414069-13413771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 41
               

               Conread position:
               1-291
               

               Cow position:
               chr1:46839643-46839338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               105, 71
               

               Conread position:
               1-292
               

               Cow position:
               chr1:1165637-1165343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               150, 53
               

               Conread position:
               1-293
               

               Cow position:
               chr1:29975561-29975855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               106, 71
               

               Conread position:
               1-293
               

               Cow position:
               chr1:102756395-102756679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               106, 38
               

               Conread position:
               1-294
               

               Cow position:
               chr1:52329480-52329789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               1-294
               

               Cow position:
               chr1:99642331-99642631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 29
               

               Conread position:
               1-294
               

               Cow position:
               chr1:100400154-100400462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               229
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               8, 63
               

               Conread position:
               1-296
               

               Cow position:
               chr1:13637625-13637928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               106, 70
               

               Conread position:
               1-296
               

               Cow position:
               chr1:16855661-16855949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               140, 60
               

               Conread position:
               1-296
               

               Cow position:
               chr1:31499662-31499366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 23
               

               Conread position:
               1-296
               

               Cow position:
               chr1:43379986-43380290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 54
               

               Conread position:
               1-296
               

               Cow position:
               chr1:78811076-78810775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               106, 40
               

               Conread position:
               1-296
               

               Cow position:
               chr1:81913113-81913413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 54
               

               Conread position:
               1-296
               

               Cow position:
               chr1:89509883-89510193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               110, 53
               

               Conread position:
               1-296
               

               Cow position:
               chr1:95017491-95017774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 54
               

               Conread position:
               1-297
               

               Cow position:
               chr1:3923762-3924056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-297
               

               Cow position:
               chr1:10063938-10064241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               128, 59
               

               Conread position:
               1-297
               

               Cow position:
               chr1:55146837-55146539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 53
               

               Conread position:
               1-298
               

               Cow position:
               chr1:6941497-6941203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 11
               

               Conread position:
               1-298
               

               Cow position:
               chr1:6958910-6958616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 11
               

               Conread position:
               1-298
               

               Cow position:
               chr1:31390551-31390847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               216
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               96, 62
               

               Conread position:
               1-298
               

               Cow position:
               chr1:34856590-34856892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 54
               

               Conread position:
               1-298
               

               Cow position:
               chr1:37321960-37322269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               227
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               108, 62
               

               Conread position:
               1-298
               

               Cow position:
               chr1:45535745-45535439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-298
               

               Cow position:
               chr1:57297520-57297231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 67
               

               Conread position:
               1-298
               

               Cow position:
               chr1:64302206-64302495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               222
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-298
               

               Cow position:
               chr1:74947079-74947380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               105, 71
               

               Conread position:
               1-298
               

               Cow position:
               chr1:81868691-81868990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               103, 62
               

               Conread position:
               1-298
               

               Cow position:
               chr1:93810467-93810180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-299
               

               Cow position:
               chr1:4032670-4032372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-301
               

               Cow position:
               chr1:28177046-28176734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               106, 57
               

               Conread position:
               1-301
               

               Cow position:
               chr1:54478367-54478056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-302
               

               Cow position:
               chr1:33996886-33997178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-302
               

               Cow position:
               chr1:42555304-42555003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 73
               

               Conread position:
               1-302
               

               Cow position:
               chr1:52956296-52955992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 67
               

               Conread position:
               1-302
               

               Cow position:
               chr1:72141613-72141297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 27
               

               Conread position:
               1-303
               

               Cow position:
               chr1:39068918-39069219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-304
               

               Cow position:
               chr1:4573558-4573250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 72
               

               Conread position:
               1-306
               

               Cow position:
               chr1:48581167-48580859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 81
               

               Conread position:
               1-308
               

               Cow position:
               chr1:79165044-79165364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 69
               

               Conread position:
               1-308
               

               Cow position:
               chr1:82337738-82338057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-309
               

               Cow position:
               chr1:81290545-81290244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               175, 71
               

               Conread position:
               1-313
               

               Cow position:
               chr1:57639477-57639798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 269
               

               Conread position:
               1-314
               

               Cow position:
               chr1:81228296-81228613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 78
               

               Conread position:
               1-325
               

               Cow position:
               chr1:1956295-1956614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-325
               

               Cow position:
               chr1:4291205-4290861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 65
               

               Conread position:
               1-325
               

               Cow position:
               chr1:89262322-89262641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               134, 55
               

               Conread position:
               1-328
               

               Cow position:
               chr1:53374471-53374144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 37
               

               Conread position:
               1-329
               

               Cow position:
               chr1:25383706-25383374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               242
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               79, 33
               

               Conread position:
               1-329
               

               Cow position:
               chr1:60032561-60032886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-330
               

               Cow position:
               chr1:54206776-54207105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               1-330
               

               Cow position:
               chr1:99609407-99609073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 29
               

               Conread position:
               1-332
               

               Cow position:
               chr1:10778601-10778279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 54
               

               Conread position:
               1-334
               

               Cow position:
               chr1:1991381-1991723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 23
               

               Conread position:
               1-334
               

               Cow position:
               chr1:89741962-89742305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 53
               

               Conread position:
               1-334
               

               Cow position:
               chr1:92434038-92433727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               106, 39
               

               Conread position:
               1-334
               

               Cow position:
               chr1:97755558-97755233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               110, 54
               

               Conread position:
               1-336
               

               Cow position:
               chr1:42360324-42359962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 75
               

               Conread position:
               1-336
               

               Cow position:
               chr1:52039676-52039342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 54
               

               Conread position:
               1-336
               

               Cow position:
               chr1:54199341-54199675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               1-336
               

               Cow position:
               chr1:79844503-79844174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               248
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               115, 45
               

               Conread position:
               1-336
               

               Cow position:
               chr1:95176977-95176640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 61
               

               Conread position:
               1-336
               

               Cow position:
               chr1:100324711-100325032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               106, 35
               

               Conread position:
               1-337
               

               Cow position:
               chr1:22448543-22448880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 70
               

               Conread position:
               1-337
               

               Cow position:
               chr1:22827195-22826871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 70
               

               Conread position:
               1-337
               

               Cow position:
               chr1:84811901-84812246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               254
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               175, 71
               

               Conread position:
               1-338
               

               Cow position:
               chr1:8653-8325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 55
               

               Conread position:
               1-338
               

               Cow position:
               chr1:874692-874346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               105, 66
               

               Conread position:
               1-338
               

               Cow position:
               chr1:3323906-3323557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 62
               

               Conread position:
               1-338
               

               Cow position:
               chr1:7350586-7350241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               1-338
               

               Cow position:
               chr1:7739986-7739676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               148, 62
               

               Conread position:
               1-338
               

               Cow position:
               chr1:11226208-11226542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:15547509-15547172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 48
               

               Conread position:
               1-338
               

               Cow position:
               chr1:21460912-21460573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 31
               

               Conread position:
               1-338
               

               Cow position:
               chr1:22730772-22730465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               175, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:24235481-24235815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 60
               

               Conread position:
               1-338
               

               Cow position:
               chr1:30441995-30441657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               105, 44
               

               Conread position:
               1-338
               

               Cow position:
               chr1:31934545-31934216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 66
               

               Conread position:
               1-338
               

               Cow position:
               chr1:34159873-34159538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:34300513-34300845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:36998223-36997900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               146, 41
               

               Conread position:
               1-338
               

               Cow position:
               chr1:37309481-37309807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:39418073-39418415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 76
               

               Conread position:
               1-338
               

               Cow position:
               chr1:41056716-41056387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               150, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:41181883-41181544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               105, 51
               

               Conread position:
               1-338
               

               Cow position:
               chr1:42256464-42256807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               105, 64
               

               Conread position:
               1-338
               

               Cow position:
               chr1:44125597-44125946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 187
               

               Conread position:
               1-338
               

               Cow position:
               chr1:45288833-45289168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:46218611-46218284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 18
               

               Conread position:
               1-338
               

               Cow position:
               chr1:48105393-48105733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 29
               

               Conread position:
               1-338
               

               Cow position:
               chr1:48444156-48444475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:48730794-48731121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 18
               

               Conread position:
               1-338
               

               Cow position:
               chr1:52753122-52753463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 97
               

               Conread position:
               1-338
               

               Cow position:
               chr1:53495506-53495165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               253
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               101, 62
               

               Conread position:
               1-338
               

               Cow position:
               chr1:56225507-56225181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 59
               

               Conread position:
               1-338
               

               Cow position:
               chr1:56719340-56719016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:61735397-61735739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               249
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               146, 62
               

               Conread position:
               1-338
               

               Cow position:
               chr1:63390729-63391069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 70
               

               Conread position:
               1-338
               

               Cow position:
               chr1:63434768-63435100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:63596016-63596358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               106, 46
               

               Conread position:
               1-338
               

               Cow position:
               chr1:68817758-68818106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 72
               

               Conread position:
               1-338
               

               Cow position:
               chr1:70297316-70296971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               96, 47
               

               Conread position:
               1-338
               

               Cow position:
               chr1:72068797-72069124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 65
               

               Conread position:
               1-338
               

               Cow position:
               chr1:73561609-73561946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 62
               

               Conread position:
               1-338
               

               Cow position:
               chr1:78092075-78091735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               247
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               1-338
               

               Cow position:
               chr1:82884355-82884682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 50
               

               Conread position:
               1-338
               

               Cow position:
               chr1:83048166-83048496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               103, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:83083046-83082708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               246
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               45, 71
               

               Conread position:
               1-338
               

               Cow position:
               chr1:84255805-84255456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               1-338
               

               Cow position:
               chr1:84283111-84282764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               106, 42
               

               Conread position:
               1-338
               

               Cow position:
               chr1:85028991-85028664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               147, 55
               

               Conread position:
               1-338
               

               Cow position:
               chr1:86113362-86113710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 41
               

               Conread position:
               1-338
               

               Cow position:
               chr1:89350003-89349680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-338
               

               Cow position:
               chr1:91066113-91066445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 55
               

               Conread position:
               1-338
               

               Cow position:
               chr1:91816733-91817068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 65
               

               Conread position:
               1-338
               

               Cow position:
               chr1:96365702-96365377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 64
               

               Conread position:
               1-338
               

               Cow position:
               chr1:99136392-99136727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 30
               

               Conread position:
               1-338
               

               Cow position:
               chr1:100450136-100450489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               86, 53
               

               Conread position:
               1-338
               

               Cow position:
               chr1:100552008-100551665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 63
               

               Conread position:
               1-338
               

               Cow position:
               chr1:102647235-102647566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 54
               

               Conread position:
               1-339
               

               Cow position:
               chr1:12870971-12871319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 59
               

               Conread position:
               1-339
               

               Cow position:
               chr1:21787374-21787025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 61
               

               Conread position:
               1-339
               

               Cow position:
               chr1:31413934-31414263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 65
               

               Conread position:
               1-339
               

               Cow position:
               chr1:71045793-71045453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-339
               

               Cow position:
               chr1:74822485-74822152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 54
               

               Conread position:
               1-339
               

               Cow position:
               chr1:83747981-83747635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               1-340
               

               Cow position:
               chr1:100800391-100800058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 55
               

               Conread position:
               1-342
               

               Cow position:
               chr1:31765336-31765696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               262
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               47, 284
               

               Conread position:
               1-342
               

               Cow position:
               chr1:35162448-35162103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 54
               

               Conread position:
               1-342
               

               Cow position:
               chr1:51394456-51394109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               1-342
               

               Cow position:
               chr1:54258605-54258271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 62
               

               Conread position:
               1-342
               

               Cow position:
               chr1:69264846-69264521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 18
               

               Conread position:
               1-342
               

               Cow position:
               chr1:90868403-90868739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               1-342
               

               Cow position:
               chr1:94226517-94226849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 18
               

               Conread position:
               1-342
               

               Cow position:
               chr1:97622178-97622503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               173, 48
               

               Conread position:
               1-342
               

               Cow position:
               chr1:100421863-100421544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               2-240
               

               Cow position:
               chr1:75142034-75141801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               146, 53
               

               Conread position:
               2-241
               

               Cow position:
               chr1:98372669-98372422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               107, 53
               

               Conread position:
               2-247
               

               Cow position:
               chr1:71228130-71227860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               92, 53
               

               Conread position:
               2-251
               

               Cow position:
               chr1:3167036-3167289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               144, 60
               

               Conread position:
               2-254
               

               Cow position:
               chr1:6304827-6305088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               105, 52
               

               Conread position:
               2-263
               

               Cow position:
               chr1:4691632-4691364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               107, 53
               

               Conread position:
               2-266
               

               Cow position:
               chr1:73761318-73761583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 40
               

               Conread position:
               2-277
               

               Cow position:
               chr1:25281620-25281918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               227
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               105, 53
               

               Conread position:
               2-292
               

               Cow position:
               chr1:38401835-38401552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               95, 61
               

               Conread position:
               2-300
               

               Cow position:
               chr1:76470690-76470392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 16
               

               Conread position:
               2-324
               

               Cow position:
               chr1:72286031-72286332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               239
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               144, 61
               

               Conread position:
               2-336
               

               Cow position:
               chr1:52206717-52206397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               110, 61
               

               Conread position:
               2-338
               

               Cow position:
               chr1:69539728-69539400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 53
               

               Conread position:
               2-338
               

               Cow position:
               chr1:72011776-72012104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               146, 53
               

               Conread position:
               2-338
               

               Cow position:
               chr1:72034887-72035226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 40
               

               Conread position:
               2-338
               

               Cow position:
               chr1:81355666-81356000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 63
               

               Conread position:
               2-342
               

               Cow position:
               chr1:53425213-53424891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 53
               

               Conread position:
               2-342
               

               Cow position:
               chr1:55163956-55163624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 59
               

               Conread position:
               3-157
               

               Cow position:
               chr1:26894940-26895090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               104, 52
               

               Conread position:
               3-161
               

               Cow position:
               chr1:8984646-8984805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               25, 53
               

               Conread position:
               3-174
               

               Cow position:
               chr1:18780298-18780467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               104, 52
               

               Conread position:
               3-174
               

               Cow position:
               chr1:60281409-60281237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               103, 60
               

               Conread position:
               3-188
               

               Cow position:
               chr1:41115679-41115864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               31, 53
               

               Conread position:
               3-199
               

               Cow position:
               chr1:101267967-101268168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               103, 27
               

               Conread position:
               3-219
               

               Cow position:
               chr1:68763648-68763866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               88, 52
               

               Conread position:
               3-240
               

               Cow position:
               chr1:6788247-6788495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               193
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               101, 60
               

               Conread position:
               3-243
               

               Cow position:
               chr1:100393132-100393373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               151, 8
               

               Conread position:
               3-263
               

               Cow position:
               chr1:52052681-52052932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 52
               

               Conread position:
               3-278
               

               Cow position:
               chr1:56477628-56477352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 60
               

               Conread position:
               3-283
               

               Cow position:
               chr1:5023726-5023988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               144, 62
               

               Conread position:
               3-284
               

               Cow position:
               chr1:96712770-96713063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               27, 61
               

               Conread position:
               3-290
               

               Cow position:
               chr1:13547949-13548245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               98, 57
               

               Conread position:
               3-291
               

               Cow position:
               chr1:3034963-3035250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               104, 49
               

               Conread position:
               3-292
               

               Cow position:
               chr1:47009069-47008770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 60
               

               Conread position:
               3-296
               

               Cow position:
               chr1:20000712-20001010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               108, 48
               

               Conread position:
               3-296
               

               Cow position:
               chr1:84240929-84240639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 53
               

               Conread position:
               3-311
               

               Cow position:
               chr1:21954185-21954492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 67
               

               Conread position:
               3-318
               

               Cow position:
               chr1:61723983-61724308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 50
               

               Conread position:
               3-322
               

               Cow position:
               chr1:52435308-52434983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               142, 63
               

               Conread position:
               3-325
               

               Cow position:
               chr1:98360360-98360702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               247
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               86, 52
               

               Conread position:
               3-335
               

               Cow position:
               chr1:29626876-29627209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 52
               

               Conread position:
               3-336
               

               Cow position:
               chr1:4374301-4374633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 66
               

               Conread position:
               3-336
               

               Cow position:
               chr1:102349710-102350064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               3-338
               

               Cow position:
               chr1:19466089-19465762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               145, 52
               

               Conread position:
               3-338
               

               Cow position:
               chr1:41697094-41696764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               258
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               100, 44
               

               Conread position:
               3-338
               

               Cow position:
               chr1:68276452-68276110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               74, 60
               

               Conread position:
               3-338
               

               Cow position:
               chr1:73960739-73960403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               103, 49
               

               Conread position:
               3-338
               

               Cow position:
               chr1:88652668-88652334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 61
               

               Conread position:
               3-338
               

               Cow position:
               chr1:101792083-101792393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               104, 52
               

               Conread position:
               3-338
               

               Cow position:
               chr1:102266232-102266568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               241
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               109, 64
               

               Conread position:
               3-339
               

               Cow position:
               chr1:44165122-44164782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               104, 63
               

               Conread position:
               3-342
               

               Cow position:
               chr1:53308353-53308693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 63
               

               Conread position:
               3-342
               

               Cow position:
               chr1:80336213-80336551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               257
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               140, 51
               

               Conread position:
               3-342
               

               Cow position:
               chr1:85151145-85151480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               107, 49
               

               Conread position:
               4-203
               

               Cow position:
               chr1:51417806-51417608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               104, 29
               

               Conread position:
               4-269
               

               Cow position:
               chr1:27145616-27145887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               83, 50
               

               Conread position:
               4-279
               

               Cow position:
               chr1:87072731-87072460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 15
               

               Conread position:
               4-298
               

               Cow position:
               chr1:57263957-57264249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 67
               

               Conread position:
               4-342
               

               Cow position:
               chr1:26943343-26943009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               102, 59
               

               Conread position:
               5-143
               

               Cow position:
               chr1:55819092-55818961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               102, 54
               

               Conread position:
               5-168
               

               Cow position:
               chr1:42868902-42869063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               94, 62
               

               Conread position:
               5-178
               

               Cow position:
               chr1:5580095-5579921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 50
               

               Conread position:
               5-184
               

               Cow position:
               chr1:71716544-71716374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               85, 9
               

               Conread position:
               5-185
               

               Cow position:
               chr1:93228559-93228379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               101, 58
               

               Conread position:
               5-199
               

               Cow position:
               chr1:69004432-69004232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               124, 65
               

               Conread position:
               5-204
               

               Cow position:
               chr1:20544335-20544127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               6, 53
               

               Conread position:
               5-204
               

               Cow position:
               chr1:57783042-57782840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               124, 67
               

               Conread position:
               5-217
               

               Cow position:
               chr1:24777955-24778161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               101, 58
               

               Conread position:
               5-226
               

               Cow position:
               chr1:42174554-42174780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               106, 66
               

               Conread position:
               5-229
               

               Cow position:
               chr1:32001279-32001515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               70, 61
               

               Conread position:
               5-234
               

               Cow position:
               chr1:43340579-43340822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               102, 62
               

               Conread position:
               5-244
               

               Cow position:
               chr1:75383015-75382782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               137, 58
               

               Conread position:
               5-255
               

               Cow position:
               chr1:98461320-98461070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               143, 50
               

               Conread position:
               5-258
               

               Cow position:
               chr1:71953110-71952864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               144, 43
               

               Conread position:
               5-261
               

               Cow position:
               chr1:15333929-15333655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               48, 252
               

               Conread position:
               5-261
               

               Cow position:
               chr1:69415675-69415943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               101, 67
               

               Conread position:
               5-262
               

               Cow position:
               chr1:26201270-26200993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               5-276
               

               Cow position:
               chr1:31234897-31235175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 58
               

               Conread position:
               5-278
               

               Cow position:
               chr1:20002194-20002479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 63
               

               Conread position:
               5-278
               

               Cow position:
               chr1:56635132-56634853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 40
               

               Conread position:
               5-284
               

               Cow position:
               chr1:55135865-55135587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 50
               

               Conread position:
               5-284
               

               Cow position:
               chr1:74084154-74084438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 66
               

               Conread position:
               5-289
               

               Cow position:
               chr1:6794887-6795190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               45, 52
               

               Conread position:
               5-289
               

               Cow position:
               chr1:101834853-101834586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               101, 57
               

               Conread position:
               5-293
               

               Cow position:
               chr1:68826870-68827163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 50
               

               Conread position:
               5-294
               

               Cow position:
               chr1:8349284-8349570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 50
               

               Conread position:
               5-298
               

               Cow position:
               chr1:7731765-7731462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               206
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               110, 67
               

               Conread position:
               5-298
               

               Cow position:
               chr1:32244361-32244662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               101, 55
               

               Conread position:
               5-301
               

               Cow position:
               chr1:56711565-56711883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               50, 226
               

               Conread position:
               5-303
               

               Cow position:
               chr1:80764501-80764803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               106, 58
               

               Conread position:
               5-308
               

               Cow position:
               chr1:64251011-64251319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 51
               

               Conread position:
               5-321
               

               Cow position:
               chr1:90641071-90640741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 50
               

               Conread position:
               5-329
               

               Cow position:
               chr1:49796033-49795712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               243
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               169, 50
               

               Conread position:
               5-329
               

               Cow position:
               chr1:68445775-68446090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               120, 50
               

               Conread position:
               5-334
               

               Cow position:
               chr1:3751904-3752236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               248
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               102, 59
               

               Conread position:
               5-337
               

               Cow position:
               chr1:100770719-100771030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               143, 58
               

               Conread position:
               5-338
               

               Cow position:
               chr1:8532180-8532511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               252
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               88, 25
               

               Conread position:
               5-338
               

               Cow position:
               chr1:11913844-11914169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 59
               

               Conread position:
               5-338
               

               Cow position:
               chr1:30034567-30034252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               243
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               149, 50
               

               Conread position:
               5-338
               

               Cow position:
               chr1:76019659-76019977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 50
               

               Conread position:
               5-338
               

               Cow position:
               chr1:82880680-82880368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 50
               

               Conread position:
               5-338
               

               Cow position:
               chr1:101822472-101822793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               246
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               101, 32
               

               Conread position:
               5-342
               

               Cow position:
               chr1:99627796-99628118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               97, 35
               

               Conread position:
               6-140
               

               Cow position:
               chr1:30189186-30189049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               18, 60
               

               Conread position:
               6-231
               

               Cow position:
               chr1:40192662-40192874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               140, 49
               

               Conread position:
               6-234
               

               Cow position:
               chr1:81471166-81470929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               101, 36
               

               Conread position:
               6-238
               

               Cow position:
               chr1:72103883-72103643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               56, 71
               

               Conread position:
               6-272
               

               Cow position:
               chr1:100512642-100512359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               74, 272
               

               Conread position:
               6-275
               

               Cow position:
               chr1:71078927-71079193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               101, 43
               

               Conread position:
               6-290
               

               Cow position:
               chr1:88971088-88970808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               217
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               101, 65
               

               Conread position:
               6-298
               

               Cow position:
               chr1:77880697-77880978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 85
               

               Conread position:
               6-302
               

               Cow position:
               chr1:41252373-41252670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 50
               

               Conread position:
               6-308
               

               Cow position:
               chr1:31871462-31871146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               96, 66
               

               Conread position:
               7-152
               

               Cow position:
               chr1:43822435-43822291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               95, 55
               

               Conread position:
               7-168
               

               Cow position:
               chr1:72105445-72105286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               17, 53
               

               Conread position:
               7-203
               

               Cow position:
               chr1:484435-484634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               98, 48
               

               Conread position:
               7-287
               

               Cow position:
               chr1:98594604-98594319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               141, 14
               

               Conread position:
               7-296
               

               Cow position:
               chr1:18936802-18937094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 35
               

               Conread position:
               7-296
               

               Cow position:
               chr1:44155281-44155001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 48
               

               Conread position:
               7-338
               

               Cow position:
               chr1:36875062-36874721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 145
               

               Conread position:
               7-338
               

               Cow position:
               chr1:53622990-53622671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 48
               

               Conread position:
               7-338
               

               Cow position:
               chr1:68253625-68253294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 48
               

               Conread position:
               7-338
               

               Cow position:
               chr1:85596977-85596649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 60
               

               Conread position:
               7-338
               

               Cow position:
               chr1:96964350-96964022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 48
               

               Conread position:
               7-342
               

               Cow position:
               chr1:26702171-26702498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 56
               

               Conread position:
               7-342
               

               Cow position:
               chr1:101551496-101551156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 105
               

               Conread position:
               8-184
               

               Cow position:
               chr1:30047566-30047740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               139, 47
               

               Conread position:
               8-194
               

               Cow position:
               chr1:51684838-51684644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               98, 55
               

               Conread position:
               8-217
               

               Cow position:
               chr1:24445596-24445811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               98, 53
               

               Conread position:
               8-219
               

               Cow position:
               chr1:3243967-3243754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               98, 47
               

               Conread position:
               8-282
               

               Cow position:
               chr1:3137957-3137686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               98, 43
               

               Conread position:
               8-310
               

               Cow position:
               chr1:34686220-34685923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 40
               

               Conread position:
               8-338
               

               Cow position:
               chr1:82505007-82504670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 55
               

               Conread position:
               9-194
               

               Cow position:
               chr1:53369244-53369054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               23, 40
               

               Conread position:
               9-229
               

               Cow position:
               chr1:34767354-34767133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               35, 62
               

               Conread position:
               9-278
               

               Cow position:
               chr1:84239079-84239350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 46
               

               Conread position:
               9-295
               

               Cow position:
               chr1:20099399-20099098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               94, 63
               

               Conread position:
               9-311
               

               Cow position:
               chr1:33720144-33719835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               95, 10
               

               Conread position:
               9-338
               

               Cow position:
               chr1:68845454-68845777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 43
               

               Conread position:
               10-205
               

               Cow position:
               chr1:91811811-91811621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               138, 45
               

               Conread position:
               10-242
               

               Cow position:
               chr1:12464635-12464871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               97, 53
               

               Conread position:
               10-284
               

               Cow position:
               chr1:11770263-11770542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 57
               

               Conread position:
               10-290
               

               Cow position:
               chr1:92369765-92369461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               97, 53
               

               Conread position:
               10-294
               

               Cow position:
               chr1:99095393-99095104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               222
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               12, 17
               

               Conread position:
               10-338
               

               Cow position:
               chr1:61391755-61392090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               97, 56
               

               Conread position:
               11-273
               

               Cow position:
               chr1:51770115-51769847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               96, 44
               

               Conread position:
               11-294
               

               Cow position:
               chr1:1403453-1403731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               92, 44
               

               Conread position:
               11-296
               

               Cow position:
               chr1:38544436-38544706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 44
               

               Conread position:
               11-342
               

               Cow position:
               chr1:5872939-5873274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 55
               

               Conread position:
               12-240
               

               Cow position:
               chr1:4414179-4414413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               46, 14
               

               Conread position:
               12-281
               

               Cow position:
               chr1:51531780-51531527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               211
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               135, 54
               

               Conread position:
               12-298
               

               Cow position:
               chr1:65103648-65103372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               94, 51
               

               Conread position:
               12-330
               

               Cow position:
               chr1:43352627-43352938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               95, 51
               

               Conread position:
               13-134
               

               Cow position:
               chr1:32788157-32788274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               93, 42
               

               Conread position:
               13-266
               

               Cow position:
               chr1:101812248-101812506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               79, 43
               

               Conread position:
               13-290
               

               Cow position:
               chr1:24655984-24655705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 47
               

               Conread position:
               14-293
               

               Cow position:
               chr1:22255395-22255133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               140, 52
               

               Conread position:
               15-262
               

               Cow position:
               chr1:53540415-53540163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               138, 35
               

               Conread position:
               15-298
               

               Cow position:
               chr1:56748625-56748327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 62
               

               Conread position:
               15-336
               

               Cow position:
               chr1:78783572-78783251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 52
               

               Conread position:
               16-227
               

               Cow position:
               chr1:83593785-83594000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               91, 46
               

               Conread position:
               16-272
               

               Cow position:
               chr1:71818439-71818699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               90, 8
               

               Conread position:
               16-299
               

               Cow position:
               chr1:63905451-63905738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               223
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               91, 39
               

               Conread position:
               16-338
               

               Cow position:
               chr1:666389-666063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               249
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               91, 47
               

               Conread position:
               16-338
               

               Cow position:
               chr1:11873338-11873652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 47
               

               Conread position:
               17-190
               

               Cow position:
               chr1:85826369-85826191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               59, 40
               

               Conread position:
               18-253
               

               Cow position:
               chr1:98557763-98558002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               129, 37
               

               Conread position:
               18-294
               

               Cow position:
               chr1:68912760-68912494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               128, 34
               

               Conread position:
               19-227
               

               Cow position:
               chr1:56674106-56674322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               91, 36
               

               Conread position:
               19-302
               

               Cow position:
               chr1:29900945-29901224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 61
               

               Conread position:
               19-339
               

               Cow position:
               chr1:100706151-100705836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               244
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               88, 36
               

               Conread position:
               20-203
               

               Cow position:
               chr1:100812556-100812734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               156, 35
               

               Conread position:
               20-244
               

               Cow position:
               chr1:41954222-41954463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               87, 42
               

               Conread position:
               20-270
               

               Cow position:
               chr1:64962648-64962890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               70, 45
               

               Conread position:
               20-284
               

               Cow position:
               chr1:50679260-50679535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               87, 45
               

               Conread position:
               20-296
               

               Cow position:
               chr1:5409596-5409875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               126, 66
               

               Conread position:
               20-296
               

               Cow position:
               chr1:81472890-81472618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               87, 36
               

               Conread position:
               20-318
               

               Cow position:
               chr1:78794717-78795021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 37
               

               Conread position:
               20-338
               

               Cow position:
               chr1:44836204-44836529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               243
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               90, 45
               

               Conread position:
               20-338
               

               Cow position:
               chr1:61725095-61725410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               241
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               75, 42
               

               Conread position:
               20-338
               

               Cow position:
               chr1:78184716-78184410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               35, 59
               

               Conread position:
               20-342
               

               Cow position:
               chr1:33811949-33811633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 50
               

               Conread position:
               21-284
               

               Cow position:
               chr1:3776601-3776863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               126, 42
               

               Conread position:
               21-338
               

               Cow position:
               chr1:58419954-58419627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               239
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               86, 34
               

               Conread position:
               21-342
               

               Cow position:
               chr1:3340956-3340629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 45
               

               Conread position:
               22-205
               

               Cow position:
               chr1:81638422-81638232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               89, 33
               

               Conread position:
               24-300
               

               Cow position:
               chr1:57900726-57901007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               124, 31
               

               Conread position:
               24-342
               

               Cow position:
               chr1:12595886-12596205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 29
               

               Conread position:
               25-275
               

               Cow position:
               chr1:95057068-95056815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 22
               

               Conread position:
               25-342
               

               Cow position:
               chr1:55357273-55357581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               242
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               86, 29
               

               Conread position:
               26-303
               

               Cow position:
               chr1:95050074-95050362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               227
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               46, 29
               

               Conread position:
               27-240
               

               Cow position:
               chr1:32013966-32013751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               119, 28
               

               Conread position:
               27-283
               

               Cow position:
               chr1:75967443-75967188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 21
               

               Conread position:
               28-338
               

               Cow position:
               chr1:22467948-22467631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 27
               

               Conread position:
               30-219
               

               Cow position:
               chr1:75933284-75933088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               76, 33
               

               Conread position:
               30-234
               

               Cow position:
               chr1:89437929-89438135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               77, 25
               

               Conread position:
               30-339
               

               Cow position:
               chr1:100741298-100740989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               80, 34
               

               Conread position:
               32-262
               

               Cow position:
               chr1:4294064-4293835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               71, 23
               

               Conread position:
               33-342
               

               Cow position:
               chr1:41004354-41004668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               78, 30
               

               Conread position:
               37-254
               

               Cow position:
               chr1:45673717-45673492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               41-292
               

               Cow position:
               chr1:3790062-3790313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               70, 35
               

               Conread position:
               52-270
               

               Cow position:
               chr1:19545112-19545334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               99, 10
               

               Conread position:
               54-336
               

               Cow position:
               chr1:77099560-77099835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               53, 27
               

               Conread position:
               56-204
               

               Cow position:
               chr1:73536728-73536573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               51, 21
               

               Conread position:
               56-279
               

               Cow position:
               chr1:20288107-20287873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               48, 7
               

               Conread position:
               58-297
               

               Cow position:
               chr1:29935399-29935643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               116, 9
               

               Conread position:
               63-294
               

               Cow position:
               chr1:87888384-87888142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               63-295
               

               Cow position:
               chr1:49839487-49839246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 9
               

               Conread position:
               65-293
               

               Cow position:
               chr1:79663687-79663924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 81
               

               Conread position:
               66-338
               

               Cow position:
               chr1:56229226-56228955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               82, 30
               

               Conread position:
               67-242
               

               Cow position:
               chr1:101207803-101207625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               14, 124
               

               Conread position:
               67-338
               

               Cow position:
               chr1:96184038-96184305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               37, 113
               

               Conread position:
               68-298
               

               Cow position:
               chr1:80555215-80555442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 102
               

               Conread position:
               72-283
               

               Cow position:
               chr1:1185711-1185491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               76, 12
               

               Conread position:
               72-326
               

               Cow position:
               chr1:34000888-34000616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               7, 246
               

               Conread position:
               73-317
               

               Cow position:
               chr1:22628667-22628919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               11, 146
               

               Conread position:
               74-284
               

               Cow position:
               chr1:57637338-57637123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               76, 9
               

               Conread position:
               74-303
               

               Cow position:
               chr1:21835916-21835682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 219
               

               Conread position:
               74-325
               

               Cow position:
               chr1:27495458-27495212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               74, 177
               

               Conread position:
               74-334
               

               Cow position:
               chr1:94212203-94211941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               72, 195
               

               Conread position:
               74-338
               

               Cow position:
               chr1:731969-732222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               199
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               102, 31
               

               Conread position:
               74-338
               

               Cow position:
               chr1:69940994-69941262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               37, 225
               

               Conread position:
               74-338
               

               Cow position:
               chr1:72304405-72304667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               74, 10
               

               Conread position:
               75-285
               

               Cow position:
               chr1:102468994-102469215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               75-338
               

               Cow position:
               chr1:79591079-79590803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 230
               

               Conread position:
               75-338
               

               Cow position:
               chr1:92370388-92370656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               32, 9
               

               Conread position:
               77-262
               

               Cow position:
               chr1:14981157-14981346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               71, 17
               

               Conread position:
               77-284
               

               Cow position:
               chr1:98708410-98708193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               77-338
               

               Cow position:
               chr1:42053363-42053622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               71, 38
               

               Conread position:
               77-342
               

               Cow position:
               chr1:81180002-81180286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               210
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               33, 246
               

               Conread position:
               78-285
               

               Cow position:
               chr1:99637810-99638030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               79-234
               

               Cow position:
               chr1:49753896-49753731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               79-302
               

               Cow position:
               chr1:84116364-84116135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               28, 129
               

               Conread position:
               81-291
               

               Cow position:
               chr1:97806754-97806536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               26, 155
               

               Conread position:
               83-291
               

               Cow position:
               chr1:90864329-90864556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               181
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               87-263
               

               Cow position:
               chr1:7450089-7449903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               20, 6
               

               Conread position:
               89-335
               

               Cow position:
               chr1:92198724-92198479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               20, 40
               

               Conread position:
               92-277
               

               Cow position:
               chr1:54732513-54732699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               18, 104
               

               Conread position:
               93-284
               

               Cow position:
               chr1:44136512-44136711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               158
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               94-294
               

               Cow position:
               chr1:21093041-21092830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               94-336
               

               Cow position:
               chr1:24528655-24528892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               13, 99
               

               Conread position:
               96-338
               

               Cow position:
               chr1:68282749-68282497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               51, 202
               

               Conread position:
               96-342
               

               Cow position:
               chr1:43211716-43211477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               49, 23
               

               Conread position:
               97-338
               

               Cow position:
               chr1:43893871-43893631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               52, 111
               

               Conread position:
               99-294
               

               Cow position:
               chr1:52488017-52488219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               46, 150
               

               Conread position:
               102-272
               

               Cow position:
               chr1:32631408-32631229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               46, 102
               

               Conread position:
               102-303
               

               Cow position:
               chr1:22836339-22836136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               102-338
               

               Cow position:
               chr1:60910292-60910048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               44, 129
               

               Conread position:
               104-284
               

               Cow position:
               chr1:14379596-14379779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               42, 122
               

               Conread position:
               105-262
               

               Cow position:
               chr1:7186733-7186560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               105-263
               

               Cow position:
               chr1:43358074-43358243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               105-276
               

               Cow position:
               chr1:30504409-30504230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               43, 164
               

               Conread position:
               105-277
               

               Cow position:
               chr1:28412402-28412567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               37, 71
               

               Conread position:
               105-284
               

               Cow position:
               chr1:89395539-89395342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               105-289
               

               Cow position:
               chr1:64160278-64160087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               49, 163
               

               Conread position:
               105-289
               

               Cow position:
               chr1:89729036-89729211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               43, 73
               

               Conread position:
               105-301
               

               Cow position:
               chr1:31347978-31348174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               40, 77
               

               Conread position:
               105-326
               

               Cow position:
               chr1:27358888-27358656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               43, 196
               

               Conread position:
               105-338
               

               Cow position:
               chr1:4027130-4026891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               42, 153
               

               Conread position:
               105-338
               

               Cow position:
               chr1:4589536-4589778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               43, 196
               

               Conread position:
               105-338
               

               Cow position:
               chr1:20125551-20125314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               42, 192
               

               Conread position:
               105-339
               

               Cow position:
               chr1:23969099-23969333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               44, 188
               

               Conread position:
               105-342
               

               Cow position:
               chr1:36613337-36613576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               43, 189
               

               Conread position:
               105-342
               

               Cow position:
               chr1:69445302-69445073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               38, 57
               

               Conread position:
               106-221
               

               Cow position:
               chr1:89083047-89082921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               106-284
               

               Cow position:
               chr1:74013322-74013516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               106-338
               

               Cow position:
               chr1:33717165-33716923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               41, 195
               

               Conread position:
               107-291
               

               Cow position:
               chr1:3757892-3757696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               107-338
               

               Cow position:
               chr1:11772138-11772378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               40, 188
               

               Conread position:
               108-274
               

               Cow position:
               chr1:96635433-96635595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               40, 50
               

               Conread position:
               109-338
               

               Cow position:
               chr1:52496717-52496479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               39, 192
               

               Conread position:
               109-338
               

               Cow position:
               chr1:71325313-71325544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               39, 182
               

               Conread position:
               109-338
               

               Cow position:
               chr1:82861715-82861476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               39, 193
               

               Conread position:
               112-296
               

               Cow position:
               chr1:13614782-13614980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               35, 123
               

               Conread position:
               118-294
               

               Cow position:
               chr1:3076471-3076650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 96
               

               Conread position:
               119-294
               

               Cow position:
               chr1:39248874-39249054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               24, 12
               

               Conread position:
               123-314
               

               Cow position:
               chr1:24225584-24225775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               53, 78
               

               Conread position:
               131-342
               

               Cow position:
               chr1:51983496-51983295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               24, 121
               

               Conread position:
               135-289
               

               Cow position:
               chr1:3872759-3872597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               139-289
               

               Cow position:
               chr1:22227748-22227605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               37, 57
               

               Conread position:
               140-338
               

               Cow position:
               chr1:79002060-79002250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               36, 77
               

               Conread position:
               151-289
               

               Cow position:
               chr1:102291338-102291471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               24, 34
               

               Conread position:
               176-298
               

               Cow position:
               chr1:76170142-76170020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               93
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-134
Cow position:	chr1:72684735-72684605 (view UCSC Genome Browser custom track)
Alignm length:	138
Alignm identity:	108
Alignm E-value:	9e-21
Alignm gaps (pig, cow):	105, 53
Conread position:	1-138
Cow position:	chr1:71796272-71796409 (view UCSC Genome Browser custom track)
Alignm length:	140
Alignm identity:	117
Alignm E-value:	3e-32
Alignm gaps (pig, cow):	105, 54
Conread position:	1-144
Cow position:	chr1:42541636-42541495 (view UCSC Genome Browser custom track)
Alignm length:	149
Alignm identity:	115
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	105, 51
Conread position:	1-146
Cow position:	chr1:54156696-54156835 (view UCSC Genome Browser custom track)
Alignm length:	148
Alignm identity:	117
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	106, 54
Conread position:	1-153
Cow position:	chr1:45285701-45285546 (view UCSC Genome Browser custom track)
Alignm length:	158
Alignm identity:	119
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	109, 66
Conread position:	1-157
Cow position:	chr1:6826258-6826405 (view UCSC Genome Browser custom track)
Alignm length:	159
Alignm identity:	122
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	147, 54
Conread position:	1-160
Cow position:	chr1:261441-261598 (view UCSC Genome Browser custom track)
Alignm length:	162
Alignm identity:	118
Alignm E-value:	9e-21
Alignm gaps (pig, cow):	147, 62
Conread position:	1-161
Cow position:	chr1:22394841-22394674 (view UCSC Genome Browser custom track)
Alignm length:	168
Alignm identity:	130
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	104, 0
Conread position:	1-173
Cow position:	chr1:64572553-64572381 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	137
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	106, 62
Conread position:	1-174
Cow position:	chr1:62519401-62519224 (view UCSC Genome Browser custom track)
Alignm length:	181
Alignm identity:	130
Alignm E-value:	9e-21
Alignm gaps (pig, cow):	102, 28
Conread position:	1-175
Cow position:	chr1:74927922-74927746 (view UCSC Genome Browser custom track)
Alignm length:	183
Alignm identity:	137
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	106, 54
Conread position:	1-177
Cow position:	chr1:78838833-78838662 (view UCSC Genome Browser custom track)
Alignm length:	181
Alignm identity:	131
Alignm E-value:	9e-21
Alignm gaps (pig, cow):	111, 11
Conread position:	1-178
Cow position:	chr1:22192807-22192625 (view UCSC Genome Browser custom track)
Alignm length:	187
Alignm identity:	143
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	71, 87
Conread position:	1-180
Cow position:	chr1:43311734-43311915 (view UCSC Genome Browser custom track)
Alignm length:	185
Alignm identity:	142
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	105, 58
Conread position:	1-181
Cow position:	chr1:85550040-85550219 (view UCSC Genome Browser custom track)
Alignm length:	188
Alignm identity:	144
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	103, 62
Conread position:	1-188
Cow position:	chr1:88913358-88913168 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	145
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	105, 62
Conread position:	1-190
Cow position:	chr1:23512621-23512806 (view UCSC Genome Browser custom track)
Alignm length:	194
Alignm identity:	153
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	147, 54
Conread position:	1-191
Cow position:	chr1:93554874-93554687 (view UCSC Genome Browser custom track)
Alignm length:	200
Alignm identity:	149
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	147, 54
Conread position:	1-195
Cow position:	chr1:7609658-7609460 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	145
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	105, 55
Conread position:	1-199
Cow position:	chr1:38753961-38753753 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	157
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	106, 57