Cow genome map

Conread name: rlnt35c_a20.y1

Conread position: 103-245
Cow position: chr1:78857251-78857102 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 10, 128

Conread position: 103-263
Cow position: chr1:59551515-59551684 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 106-238
Cow position: chr1:56225555-56225684 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 109-238
Cow position: chr1:70175449-70175325 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 94, 15

Conread position: 110-213
Cow position: chr1:1799117-1799225 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 110-226
Cow position: chr1:68855252-68855373 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 110-230
Cow position: chr1:43052414-43052292 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 34

Conread position: 110-246
Cow position: chr1:53452610-53452747 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 54

Conread position: 110-248
Cow position: chr1:75744949-75745089 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 110-250
Cow position: chr1:86110657-86110517 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 115

Conread position: 110-251
Cow position: chr1:30028145-30027998 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 87, 0

Conread position: 110-252
Cow position: chr1:45233078-45233212 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 93, 21

Conread position: 110-257
Cow position: chr1:39095575-39095724 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 113, 0

Conread position: 111-226
Cow position: chr1:25383756-25383875 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 112-238
Cow position: chr1:102768265-102768394 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 112-245
Cow position: chr1:98557031-98556893 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 112-252
Cow position: chr1:42175818-42175959 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 10

Conread position: 114-248
Cow position: chr1:92999140-92999279 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 114-257
Cow position: chr1:1489318-1489169 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 11, 116

Conread position: 115-261
Cow position: chr1:49024382-49024531 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 117-224
Cow position: chr1:87989097-87988989 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 27

Conread position: 117-230
Cow position: chr1:73644413-73644298 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 82, 27

Conread position: 117-241
Cow position: chr1:5597117-5596991 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 82, 27

Conread position: 117-241
Cow position: chr1:46294497-46294380 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 80, 14

Conread position: 117-245
Cow position: chr1:91023373-91023244 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 108

Conread position: 117-248
Cow position: chr1:97755597-97755727 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 82, 14

Conread position: 117-258
Cow position: chr1:54267845-54267701 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 82, 28

Conread position: 117-263
Cow position: chr1:23101769-23101918 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 27

Conread position: 119-225
Cow position: chr1:89388440-89388548 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 80, 25

Conread position: 119-227
Cow position: chr1:42887181-42887073 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 25

Conread position: 119-227
Cow position: chr1:68817703-68817594 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 25

Conread position: 119-227
Cow position: chr1:70476655-70476546 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 15

Conread position: 119-227
Cow position: chr1:99605091-99604985 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 119-230
Cow position: chr1:50585780-50585666 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 119-230
Cow position: chr1:56618559-56618445 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 75, 18

Conread position: 119-230
Cow position: chr1:93960064-93959952 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 119-231
Cow position: chr1:57575668-57575550 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 119-231
Cow position: chr1:67654224-67654115 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 119-231
Cow position: chr1:82538024-82538138 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 80, 25

Conread position: 119-240
Cow position: chr1:41027170-41027292 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 76, 40

Conread position: 119-241
Cow position: chr1:89158608-89158487 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 119-241
Cow position: chr1:90621409-90621286 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 45, 25

Conread position: 119-243
Cow position: chr1:196909-196781 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 84, 15

Conread position: 119-245
Cow position: chr1:80423635-80423508 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 25

Conread position: 119-246
Cow position: chr1:62469156-62469283 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 81, 40

Conread position: 119-246
Cow position: chr1:102523545-102523412 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 66

Conread position: 119-247
Cow position: chr1:71945988-71945854 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 111

Conread position: 119-249
Cow position: chr1:93590490-93590361 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 119-251
Cow position: chr1:70483238-70483107 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 25

Conread position: 119-251
Cow position: chr1:99221537-99221404 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 29

Conread position: 119-253
Cow position: chr1:20104362-20104500 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 119-255
Cow position: chr1:64811331-64811472 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 119-257
Cow position: chr1:40212248-40212110 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 25

Conread position: 119-257
Cow position: chr1:55705147-55705012 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 119-258
Cow position: chr1:3679431-3679287 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 67, 25

Conread position: 119-258
Cow position: chr1:24132967-24132824 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 25

Conread position: 119-258
Cow position: chr1:83066735-83066593 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 119-259
Cow position: chr1:79630820-79630684 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 26

Conread position: 119-260
Cow position: chr1:19384360-19384217 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 25

Conread position: 120-220
Cow position: chr1:53651076-53651179 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 24

Conread position: 120-228
Cow position: chr1:6731277-6731387 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 24

Conread position: 120-246
Cow position: chr1:42482294-42482425 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 118

Conread position: 120-251
Cow position: chr1:95829036-95828905 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 113

Conread position: 120-253
Cow position: chr1:86682470-86682336 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 26

Conread position: 120-255
Cow position: chr1:71119617-71119757 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 15, 35

Conread position: 120-260
Cow position: chr1:55230073-55230213 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 84, 24

Conread position: 120-263
Cow position: chr1:1496435-1496285 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 121

Conread position: 120-263
Cow position: chr1:38706757-38706610 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 121-251
Cow position: chr1:50906582-50906452 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 83, 23

Conread position: 121-251
Cow position: chr1:90904658-90904530 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 78, 23

Conread position: 122-260
Cow position: chr1:44678411-44678554 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 122-260
Cow position: chr1:79038209-79038354 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 23, 118

Conread position: 122-263
Cow position: chr1:67346258-67346404 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 73, 25

Conread position: 124-226
Cow position: chr1:90192517-90192626 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 124-238
Cow position: chr1:81568926-81568813 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 75, 10

Conread position: 124-253
Cow position: chr1:74751530-74751395 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 124-253
Cow position: chr1:91912431-91912564 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 115

Conread position: 124-257
Cow position: chr1:41138042-41137908 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 73, 10

Conread position: 125-242
Cow position: chr1:99322462-99322348 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 20

Conread position: 125-256
Cow position: chr1:81615756-81615886 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 13, 47

Conread position: 126-258
Cow position: chr1:66445065-66445192 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 127-263
Cow position: chr1:81477762-81477621 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 107

Conread position: 128-263
Cow position: chr1:52429455-52429315 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 129-257
Cow position: chr1:54206714-54206582 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 129-262
Cow position: chr1:96609139-96609272 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 20

Conread position: 131-257
Cow position: chr1:1981002-1980874 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 110
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 94

Conread position: 132-263
Cow position: chr1:75189900-75190030 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 135-247
Cow position: chr1:11708911-11708796 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 30

Conread position: 137-263
Cow position: chr1:10017260-10017132 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 98

Conread position: 139-258
Cow position: chr1:12390364-12390248 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 141-255
Cow position: chr1:70344165-70344279 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 93

Conread position: 142-252
Cow position: chr1:100733226-100733113 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 146-256
Cow position: chr1:79898424-79898534 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 83

Conread position: 150-260
Cow position: chr1:3034078-3033967 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 154-263
Cow position: chr1:5407001-5406889 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.