Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 90-224 |
| Cow position: | chr16:21761888-21761749 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 108-230 |
| Cow position: | chr16:45294627-45294751 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 110-225 |
| Cow position: | chr16:41696090-41696206 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 34 |
| Conread position: | 110-226 |
| Cow position: | chr16:8462001-8461881 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 110-226 |
| Cow position: | chr16:49734064-49733944 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 110-230 |
| Cow position: | chr16:23515684-23515560 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 110-241 |
| Cow position: | chr16:12236223-12236092 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 110-244 |
| Cow position: | chr16:8738147-8738288 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 110-252 |
| Cow position: | chr16:53451787-53451931 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 110-262 |
| Cow position: | chr16:2102778-2102629 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 111-226 |
| Cow position: | chr16:11083079-11083197 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 112-248 |
| Cow position: | chr16:7665720-7665863 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 112-263 |
| Cow position: | chr16:8288867-8288716 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 114-248 |
| Cow position: | chr16:54692863-54693000 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 116-244 |
| Cow position: | chr16:30036327-30036454 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 116-247 |
| Cow position: | chr16:15889677-15889803 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 117-230 |
| Cow position: | chr16:33077025-33076909 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 117-247 |
| Cow position: | chr16:7727958-7727820 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 119-225 |
| Cow position: | chr16:48130304-48130196 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 119-226 |
| Cow position: | chr16:7912219-7912328 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 119-226 |
| Cow position: | chr16:35477045-35476940 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-226 |
| Cow position: | chr16:48956889-48957000 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 119-229 |
| Cow position: | chr16:20824568-20824681 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 119-230 |
| Cow position: | chr16:14376870-14376986 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 119-230 |
| Cow position: | chr16:45678069-45678183 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 119-231 |
| Cow position: | chr16:42078757-42078640 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 119-246 |
| Cow position: | chr16:13306781-13306651 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 119-246 |
| Cow position: | chr16:31149468-31149594 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 119-248 |
| Cow position: | chr16:46433234-46433105 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 114 |
| Conread position: | 119-255 |
| Cow position: | chr16:44584348-44584212 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 40 |
| Conread position: | 119-256 |
| Cow position: | chr16:19478674-19478535 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 119-261 |
| Cow position: | chr16:935365-935220 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 119-261 |
| Cow position: | chr16:41095820-41095966 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 119-263 |
| Cow position: | chr16:31011418-31011567 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 120-238 |
| Cow position: | chr16:21442520-21442396 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 120-243 |
| Cow position: | chr16:48455764-48455890 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 120-244 |
| Cow position: | chr16:17617271-17617143 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 120-256 |
| Cow position: | chr16:56912596-56912455 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 121-238 |
| Cow position: | chr16:1582833-1582714 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 122-261 |
| Cow position: | chr16:14242462-14242605 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 125-253 |
| Cow position: | chr16:49336319-49336450 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 125-254 |
| Cow position: | chr16:11584308-11584179 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 127-245 |
| Cow position: | chr16:20070244-20070358 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 132-258 |
| Cow position: | chr16:30596388-30596264 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 101 |
| Conread position: | 133-231 |
| Cow position: | chr16:11791190-11791290 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 136-237 |
| Cow position: | chr16:11105722-11105826 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 140-254 |
| Cow position: | chr16:52834789-52834673 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 86 |
| Conread position: | 143-244 |
| Cow position: | chr16:8837253-8837152 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 146-257 |
| Cow position: | chr16:3304154-3304268 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 147-238 |
| Cow position: | chr16:33198311-33198221 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 147-263 |
| Cow position: | chr16:37399734-37399853 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 81 |
Show alignments to all cow chromosomes.