Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 103-251 |
| Cow position: | chr17:6318754-6318602 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 103-261 |
| Cow position: | chr17:25800768-25800606 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 104-263 |
| Cow position: | chr17:20929355-20929521 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 17, 127 |
| Conread position: | 106-228 |
| Cow position: | chr17:4680088-4679965 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 110-224 |
| Cow position: | chr17:42675917-42675801 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 110-226 |
| Cow position: | chr17:20022392-20022273 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 110-233 |
| Cow position: | chr17:908862-908987 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 110-237 |
| Cow position: | chr17:7810633-7810496 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 110-256 |
| Cow position: | chr17:33155033-33154889 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 110-259 |
| Cow position: | chr17:2729796-2729642 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 111-253 |
| Cow position: | chr17:21039680-21039820 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 112-251 |
| Cow position: | chr17:21236645-21236791 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 112-254 |
| Cow position: | chr17:20930428-20930570 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 117-224 |
| Cow position: | chr17:1634363-1634255 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 119-224 |
| Cow position: | chr17:9260481-9260372 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 119-225 |
| Cow position: | chr17:18934390-18934496 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 119-226 |
| Cow position: | chr17:37340900-37340790 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 119-226 |
| Cow position: | chr17:43315158-43315049 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 119-228 |
| Cow position: | chr17:21677021-21677134 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 119-229 |
| Cow position: | chr17:946488-946600 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 119-229 |
| Cow position: | chr17:15103609-15103498 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 119-230 |
| Cow position: | chr17:8809374-8809263 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 119-230 |
| Cow position: | chr17:29995305-29995189 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 119-230 |
| Cow position: | chr17:40276871-40276981 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 119-231 |
| Cow position: | chr17:831668-831556 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 119-231 |
| Cow position: | chr17:9824800-9824913 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 119-237 |
| Cow position: | chr17:25473149-25473029 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 119-238 |
| Cow position: | chr17:20836221-20836344 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 119-242 |
| Cow position: | chr17:10016409-10016532 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 119-242 |
| Cow position: | chr17:24587755-24587880 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 77, 25 |
| Conread position: | 119-242 |
| Cow position: | chr17:32332960-32332837 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 119-243 |
| Cow position: | chr17:26818340-26818215 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 119-246 |
| Cow position: | chr17:8948832-8948705 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 117, 25 |
| Conread position: | 119-249 |
| Cow position: | chr17:32418985-32418855 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-251 |
| Cow position: | chr17:17782186-17782317 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 119-255 |
| Cow position: | chr17:27606648-27606782 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 82, 25 |
| Conread position: | 119-257 |
| Cow position: | chr17:7959311-7959447 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-263 |
| Cow position: | chr17:21718866-21718721 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 81, 107 |
| Conread position: | 120-230 |
| Cow position: | chr17:20157739-20157853 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 120-247 |
| Cow position: | chr17:30501679-30501552 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 120-251 |
| Cow position: | chr17:43971022-43970890 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 121-230 |
| Cow position: | chr17:22223848-22223959 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 121-249 |
| Cow position: | chr17:20071966-20071839 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 122-250 |
| Cow position: | chr17:20881675-20881556 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 122-259 |
| Cow position: | chr17:42589434-42589575 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 124-253 |
| Cow position: | chr17:26849634-26849499 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 124-258 |
| Cow position: | chr17:36791263-36791396 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 124-263 |
| Cow position: | chr17:32027315-32027169 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 125-255 |
| Cow position: | chr17:5280514-5280381 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 125-257 |
| Cow position: | chr17:13940185-13940046 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 125-262 |
| Cow position: | chr17:7732981-7732840 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 126-226 |
| Cow position: | chr17:37152506-37152405 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 8 |
| Conread position: | 126-262 |
| Cow position: | chr17:42150529-42150665 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 126-263 |
| Cow position: | chr17:18766845-18766714 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 127-241 |
| Cow position: | chr17:33288517-33288401 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 7 |
| Conread position: | 130-263 |
| Cow position: | chr17:7659455-7659319 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 136-246 |
| Cow position: | chr17:16046515-16046402 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 137-251 |
| Cow position: | chr17:5323906-5324020 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 140-218 |
| Cow position: | chr17:6101388-6101467 (view UCSC Genome Browser custom track) |
| Alignm length: | 80 |
| Alignm identity: | 72 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 140-241 |
| Cow position: | chr17:24824398-24824502 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 146-253 |
| Cow position: | chr17:24895238-24895343 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 149-247 |
| Cow position: | chr17:22805970-22805872 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-254 |
| Cow position: | chr17:22016900-22016795 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.