Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 108-221 |
| Cow position: | chr18:9365970-9366084 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 108-239 |
| Cow position: | chr18:17838087-17837954 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 109-252 |
| Cow position: | chr18:56361331-56361192 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 13 |
| Conread position: | 110-225 |
| Cow position: | chr18:18520753-18520635 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 110-238 |
| Cow position: | chr18:17390946-17390812 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 110-246 |
| Cow position: | chr18:41257873-41257731 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 125 |
| Conread position: | 110-247 |
| Cow position: | chr18:22180729-22180592 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 110-263 |
| Cow position: | chr18:30295559-30295404 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 111-250 |
| Cow position: | chr18:21410734-21410877 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 112-235 |
| Cow position: | chr18:51190457-51190333 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 112-253 |
| Cow position: | chr18:37690199-37690345 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 114-231 |
| Cow position: | chr18:20391256-20391378 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 114-244 |
| Cow position: | chr18:20462654-20462520 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 114-254 |
| Cow position: | chr18:6881303-6881165 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 116-250 |
| Cow position: | chr18:29945589-29945727 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 117-229 |
| Cow position: | chr18:49440896-49441013 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 117-230 |
| Cow position: | chr18:14225449-14225559 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 117-244 |
| Cow position: | chr18:50632387-50632262 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 117-252 |
| Cow position: | chr18:35535091-35534956 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 117-259 |
| Cow position: | chr18:50276188-50276042 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 118-263 |
| Cow position: | chr18:1584758-1584610 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 119-214 |
| Cow position: | chr18:44548689-44548591 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 119-221 |
| Cow position: | chr18:6310139-6310242 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 119-221 |
| Cow position: | chr18:25598175-25598071 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 119-223 |
| Cow position: | chr18:50786906-50786802 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-225 |
| Cow position: | chr18:47096486-47096588 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 119-226 |
| Cow position: | chr18:22790031-22789923 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 119-228 |
| Cow position: | chr18:30247947-30247836 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 119-229 |
| Cow position: | chr18:11691352-11691236 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 119-230 |
| Cow position: | chr18:4907204-4907315 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 119-230 |
| Cow position: | chr18:9974271-9974159 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 119-230 |
| Cow position: | chr18:10977154-10977044 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-230 |
| Cow position: | chr18:17974682-17974795 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 119-230 |
| Cow position: | chr18:34444679-34444566 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 26 |
| Conread position: | 119-230 |
| Cow position: | chr18:49602986-49602871 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 119-230 |
| Cow position: | chr18:51383340-51383228 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 119-231 |
| Cow position: | chr18:4884463-4884347 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-231 |
| Cow position: | chr18:6829064-6828949 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 119-231 |
| Cow position: | chr18:52626227-52626340 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 119-232 |
| Cow position: | chr18:9010765-9010877 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-241 |
| Cow position: | chr18:50095352-50095227 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 119-250 |
| Cow position: | chr18:51398276-51398143 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-251 |
| Cow position: | chr18:42432032-42431900 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 119-252 |
| Cow position: | chr18:55505461-55505596 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 119-255 |
| Cow position: | chr18:2793914-2793779 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 119-262 |
| Cow position: | chr18:1571180-1571036 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 119-262 |
| Cow position: | chr18:21751435-21751581 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 120-230 |
| Cow position: | chr18:33896360-33896243 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 120-247 |
| Cow position: | chr18:45558206-45558331 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 121-230 |
| Cow position: | chr18:35112246-35112137 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 121-247 |
| Cow position: | chr18:51405852-51405729 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 121-251 |
| Cow position: | chr18:47824714-47824583 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 123-226 |
| Cow position: | chr18:35827312-35827211 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 124-245 |
| Cow position: | chr18:23810057-23809935 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 124-258 |
| Cow position: | chr18:12023575-12023440 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 124-263 |
| Cow position: | chr18:4546391-4546249 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 127-226 |
| Cow position: | chr18:4626724-4626623 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 127-261 |
| Cow position: | chr18:22174121-22174259 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 128-249 |
| Cow position: | chr18:34093765-34093886 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 130-263 |
| Cow position: | chr18:52649272-52649135 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 134-242 |
| Cow position: | chr18:20126364-20126474 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 92 |
Show alignments to all cow chromosomes.