Cow genome map

Conread name: rlnt35c_a20.y1

Conread position: 83-257
Cow position: chr2:34695273-34695448 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 28

Conread position: 101-261
Cow position: chr2:65433639-65433803 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 102-231
Cow position: chr2:11163153-11163016 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 103-226
Cow position: chr2:21171677-21171803 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 108-244
Cow position: chr2:12866286-12866145 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 16

Conread position: 110-221
Cow position: chr2:85460007-85460118 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 110-225
Cow position: chr2:45619314-45619197 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 87, 35

Conread position: 110-225
Cow position: chr2:84480419-84480300 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 45, 34

Conread position: 110-226
Cow position: chr2:64562857-64562736 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 110-229
Cow position: chr2:55660808-55660927 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 89, 33

Conread position: 110-230
Cow position: chr2:19137808-19137686 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 34

Conread position: 110-240
Cow position: chr2:77212100-77211970 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 72, 34

Conread position: 110-250
Cow position: chr2:28872974-28873115 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 83, 44

Conread position: 110-250
Cow position: chr2:29806177-29806318 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 119
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 85, 34

Conread position: 110-252
Cow position: chr2:44051390-44051532 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 85, 116

Conread position: 110-253
Cow position: chr2:45597062-45597208 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 89, 24

Conread position: 110-259
Cow position: chr2:80275212-80275060 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 44, 34

Conread position: 112-241
Cow position: chr2:65988182-65988307 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 112-259
Cow position: chr2:51417216-51417075 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 33

Conread position: 112-263
Cow position: chr2:64473270-64473113 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 66

Conread position: 113-225
Cow position: chr2:46130075-46129966 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 114-231
Cow position: chr2:45776202-45776320 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 31

Conread position: 115-263
Cow position: chr2:5300681-5300836 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 116-244
Cow position: chr2:46057925-46057794 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 111

Conread position: 117-211
Cow position: chr2:56338942-56338850 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 117-230
Cow position: chr2:39187459-39187575 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 27

Conread position: 117-231
Cow position: chr2:13001885-13002002 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 49

Conread position: 117-244
Cow position: chr2:6952556-6952684 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 80, 27

Conread position: 117-246
Cow position: chr2:3773238-3773105 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 111
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 117-246
Cow position: chr2:51024111-51023986 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 119-219
Cow position: chr2:51099884-51099780 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 119-221
Cow position: chr2:31223614-31223507 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 119-221
Cow position: chr2:45642396-45642297 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 89
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 119-225
Cow position: chr2:23302-23194 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 25

Conread position: 119-225
Cow position: chr2:4207477-4207369 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 37

Conread position: 119-225
Cow position: chr2:15872026-15872129 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 80, 25

Conread position: 119-226
Cow position: chr2:19494305-19494415 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 119-226
Cow position: chr2:53650109-53650216 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 43, 26

Conread position: 119-227
Cow position: chr2:1358667-1358557 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 97
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 84, 25

Conread position: 119-227
Cow position: chr2:66959766-66959880 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 119-230
Cow position: chr2:39456202-39456315 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 75, 25

Conread position: 119-230
Cow position: chr2:39590348-39590460 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 52

Conread position: 119-230
Cow position: chr2:43577687-43577574 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 25

Conread position: 119-230
Cow position: chr2:56568514-56568397 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 119-230
Cow position: chr2:63568801-63568913 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 28

Conread position: 119-231
Cow position: chr2:5604615-5604726 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 119-231
Cow position: chr2:38965708-38965814 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 119-231
Cow position: chr2:46312531-46312641 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 119-241
Cow position: chr2:55526684-55526559 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 23, 114

Conread position: 119-241
Cow position: chr2:68239294-68239416 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 24

Conread position: 119-242
Cow position: chr2:971915-972034 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 119-242
Cow position: chr2:39274868-39275000 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 119-244
Cow position: chr2:17453331-17453458 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 25

Conread position: 119-244
Cow position: chr2:46162048-46162170 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 85, 26

Conread position: 119-246
Cow position: chr2:58153795-58153923 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 76, 25

Conread position: 119-246
Cow position: chr2:62743918-62743789 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 25

Conread position: 119-246
Cow position: chr2:63250317-63250196 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 96, 24

Conread position: 119-247
Cow position: chr2:34811061-34810935 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 74, 102

Conread position: 119-248
Cow position: chr2:41462333-41462201 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 25

Conread position: 119-249
Cow position: chr2:12950074-12949939 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 119-249
Cow position: chr2:18997810-18997938 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 80, 25

Conread position: 119-249
Cow position: chr2:60091342-60091214 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 79, 15

Conread position: 119-249
Cow position: chr2:82605133-82605266 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 25

Conread position: 119-251
Cow position: chr2:46033426-46033561 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 119-258
Cow position: chr2:1205395-1205540 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 8, 16

Conread position: 119-258
Cow position: chr2:45499111-45498970 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 17

Conread position: 119-259
Cow position: chr2:43995027-43995164 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 119-260
Cow position: chr2:24393609-24393458 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 120

Conread position: 119-260
Cow position: chr2:43591282-43591140 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 26

Conread position: 119-263
Cow position: chr2:46189005-46188860 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 80, 25

Conread position: 120-250
Cow position: chr2:19320091-19320220 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 38, 113

Conread position: 120-259
Cow position: chr2:1364507-1364363 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 42, 14

Conread position: 120-261
Cow position: chr2:18243630-18243771 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 103, 24

Conread position: 121-225
Cow position: chr2:11656983-11657089 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 78, 23

Conread position: 121-257
Cow position: chr2:71621955-71621816 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 83, 23

Conread position: 122-263
Cow position: chr2:47230487-47230623 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 101, 21

Conread position: 123-263
Cow position: chr2:18589436-18589300 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 71, 11

Conread position: 124-230
Cow position: chr2:16412602-16412709 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 10

Conread position: 124-243
Cow position: chr2:69199225-69199109 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 124-246
Cow position: chr2:15348489-15348618 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 124-252
Cow position: chr2:39371512-39371638 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 24

Conread position: 124-253
Cow position: chr2:29290220-29290090 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 75, 0

Conread position: 124-253
Cow position: chr2:39566598-39566470 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 26

Conread position: 124-258
Cow position: chr2:14855544-14855682 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 115

Conread position: 125-253
Cow position: chr2:15400848-15400719 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 75, 9

Conread position: 127-240
Cow position: chr2:78641485-78641597 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 96, 68

Conread position: 127-245
Cow position: chr2:59992153-59992031 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 112

Conread position: 127-251
Cow position: chr2:36124530-36124657 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 110

Conread position: 140-263
Cow position: chr2:53518501-53518377 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 57, 19

Conread position: 145-231
Cow position: chr2:30911466-30911551 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 146-231
Cow position: chr2:18810025-18809940 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 146-242
Cow position: chr2:7533663-7533564 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.