Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 85-255 |
| Cow position: | chr22:34441576-34441408 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 103-261 |
| Cow position: | chr22:23630283-23630123 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 110-225 |
| Cow position: | chr22:6721003-6720885 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 110-231 |
| Cow position: | chr22:16813874-16813996 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 110-255 |
| Cow position: | chr22:24903670-24903816 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 110-256 |
| Cow position: | chr22:10594686-10594836 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 111-258 |
| Cow position: | chr22:1979683-1979832 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 121 |
| Conread position: | 112-238 |
| Cow position: | chr22:18259298-18259424 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 112-263 |
| Cow position: | chr22:14488014-14488171 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 128 |
| Conread position: | 117-221 |
| Cow position: | chr22:14141257-14141149 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 117-226 |
| Cow position: | chr22:24890306-24890417 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 27 |
| Conread position: | 117-231 |
| Cow position: | chr22:4164063-4164181 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 117-251 |
| Cow position: | chr22:26056780-26056643 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 117-255 |
| Cow position: | chr22:1105539-1105400 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 117-257 |
| Cow position: | chr22:12207621-12207480 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 118-225 |
| Cow position: | chr22:6709705-6709594 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 118-231 |
| Cow position: | chr22:2403966-2404083 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 119-224 |
| Cow position: | chr22:4373129-4373229 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 119-225 |
| Cow position: | chr22:30818299-30818405 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 119-226 |
| Cow position: | chr22:5778999-5778883 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 119-226 |
| Cow position: | chr22:9735356-9735465 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 119-226 |
| Cow position: | chr22:38439070-38438961 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 119-226 |
| Cow position: | chr22:44741163-44741267 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 119-229 |
| Cow position: | chr22:16094819-16094706 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 119-229 |
| Cow position: | chr22:44717808-44717920 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 119-230 |
| Cow position: | chr22:7584154-7584042 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 119-231 |
| Cow position: | chr22:4060860-4060745 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 119-231 |
| Cow position: | chr22:29546726-29546838 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 119-240 |
| Cow position: | chr22:13957557-13957435 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 25 |
| Conread position: | 119-241 |
| Cow position: | chr22:12902768-12902645 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-243 |
| Cow position: | chr22:21526999-21527124 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 28 |
| Conread position: | 119-245 |
| Cow position: | chr22:33485532-33485408 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 111, 25 |
| Conread position: | 119-245 |
| Cow position: | chr22:33566007-33565879 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 119-247 |
| Cow position: | chr22:7518642-7518770 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 119-247 |
| Cow position: | chr22:42618087-42618214 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 117, 12 |
| Conread position: | 119-248 |
| Cow position: | chr22:285280-285148 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 119-248 |
| Cow position: | chr22:15950299-15950172 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-254 |
| Cow position: | chr22:17652522-17652657 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-255 |
| Cow position: | chr22:36432886-36432750 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 119-256 |
| Cow position: | chr22:1500981-1501113 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 119-261 |
| Cow position: | chr22:30684815-30684955 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 119-263 |
| Cow position: | chr22:8357673-8357813 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 120-238 |
| Cow position: | chr22:39507953-39507832 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 120-247 |
| Cow position: | chr22:6149303-6149172 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 120-259 |
| Cow position: | chr22:16529946-16529807 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 120-262 |
| Cow position: | chr22:1309646-1309504 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 120-263 |
| Cow position: | chr22:33399401-33399258 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 109 |
| Conread position: | 121-238 |
| Cow position: | chr22:13891665-13891784 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 24 |
| Conread position: | 121-240 |
| Cow position: | chr22:28371023-28371141 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 121-246 |
| Cow position: | chr22:30615819-30615947 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 121-249 |
| Cow position: | chr22:2100857-2100728 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 122-246 |
| Cow position: | chr22:30074685-30074555 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 124-230 |
| Cow position: | chr22:41982629-41982522 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 82 |
| Conread position: | 124-250 |
| Cow position: | chr22:29345682-29345809 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 79, 21 |
| Conread position: | 125-226 |
| Cow position: | chr22:17852544-17852441 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 126-227 |
| Cow position: | chr22:28357123-28357225 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 126-249 |
| Cow position: | chr22:16140618-16140744 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 126-258 |
| Cow position: | chr22:1659268-1659394 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 127-256 |
| Cow position: | chr22:12586618-12586746 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 127-256 |
| Cow position: | chr22:21568088-21568216 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 132-225 |
| Cow position: | chr22:9745494-9745398 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 132-230 |
| Cow position: | chr22:26945470-26945370 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 133-230 |
| Cow position: | chr22:9334936-9334836 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 138-262 |
| Cow position: | chr22:21303917-21303793 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-225 |
| Cow position: | chr22:3388839-3388924 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-254 |
| Cow position: | chr22:12974031-12973922 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 147-240 |
| Cow position: | chr22:10030963-10030867 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 150-225 |
| Cow position: | chr22:13016505-13016430 (view UCSC Genome Browser custom track) |
| Alignm length: | 76 |
| Alignm identity: | 71 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-254 |
| Cow position: | chr22:27643872-27643976 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 152-257 |
| Cow position: | chr22:3250863-3250752 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.