Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 88-247 |
| Cow position: | chr25:14659065-14658907 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 102-260 |
| Cow position: | chr25:7012798-7012956 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 110-226 |
| Cow position: | chr25:4157167-4157049 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 110-229 |
| Cow position: | chr25:7450142-7450260 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 89, 24 |
| Conread position: | 110-229 |
| Cow position: | chr25:26089746-26089626 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 110-230 |
| Cow position: | chr25:33557345-33557468 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 110-238 |
| Cow position: | chr25:35762666-35762798 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 110-246 |
| Cow position: | chr25:3972547-3972683 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 25 |
| Conread position: | 110-247 |
| Cow position: | chr25:7551288-7551150 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 53 |
| Conread position: | 110-254 |
| Cow position: | chr25:13565257-13565109 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 41, 123 |
| Conread position: | 110-254 |
| Cow position: | chr25:24573144-24573283 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 112-249 |
| Cow position: | chr25:18551255-18551112 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 112-251 |
| Cow position: | chr25:9025202-9025343 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 114-245 |
| Cow position: | chr25:30624982-30624851 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 113, 33 |
| Conread position: | 115-226 |
| Cow position: | chr25:2662479-2662592 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 117-243 |
| Cow position: | chr25:22315291-22315420 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 117-251 |
| Cow position: | chr25:3992865-3993003 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 119-219 |
| Cow position: | chr25:19363971-19363869 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 119-226 |
| Cow position: | chr25:21192852-21192743 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-226 |
| Cow position: | chr25:24669361-24669254 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-229 |
| Cow position: | chr25:13272657-13272770 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 119-229 |
| Cow position: | chr25:41150877-41150763 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 119-230 |
| Cow position: | chr25:33550599-33550714 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 119-231 |
| Cow position: | chr25:1802699-1802814 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 119-233 |
| Cow position: | chr25:22734095-22734211 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 119-237 |
| Cow position: | chr25:36746362-36746238 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 119-238 |
| Cow position: | chr25:2414885-2415005 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 79, 107 |
| Conread position: | 119-238 |
| Cow position: | chr25:28667958-28667842 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 119-241 |
| Cow position: | chr25:17141190-17141318 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 119-242 |
| Cow position: | chr25:21082319-21082190 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 119-242 |
| Cow position: | chr25:22752982-22753107 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 25 |
| Conread position: | 119-243 |
| Cow position: | chr25:13823632-13823504 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 119-243 |
| Cow position: | chr25:26679314-26679441 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 119-245 |
| Cow position: | chr25:7684812-7684683 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 119-249 |
| Cow position: | chr25:18934547-18934417 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 119-252 |
| Cow position: | chr25:13826523-13826655 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 119-254 |
| Cow position: | chr25:24115228-24115090 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 108 |
| Conread position: | 119-261 |
| Cow position: | chr25:7750540-7750679 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 119-262 |
| Cow position: | chr25:5637297-5637154 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 119-262 |
| Cow position: | chr25:15999464-15999316 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 120-230 |
| Cow position: | chr25:23519943-23519835 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 120-241 |
| Cow position: | chr25:7864422-7864543 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 120-261 |
| Cow position: | chr25:18201840-18201693 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 121-231 |
| Cow position: | chr25:15349818-15349706 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 122-256 |
| Cow position: | chr25:10407323-10407185 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 124-232 |
| Cow position: | chr25:19460166-19460280 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 124-251 |
| Cow position: | chr25:6940395-6940268 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 124-261 |
| Cow position: | chr25:28423238-28423381 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 124-262 |
| Cow position: | chr25:35384243-35384102 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 125-238 |
| Cow position: | chr25:20523140-20523029 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 125-257 |
| Cow position: | chr25:22565866-22565740 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 127-243 |
| Cow position: | chr25:6268158-6268278 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 140-230 |
| Cow position: | chr25:27530874-27530786 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 140-257 |
| Cow position: | chr25:16570663-16570782 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 144-253 |
| Cow position: | chr25:9829872-9829975 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 146-263 |
| Cow position: | chr25:22577193-22577076 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 149-226 |
| Cow position: | chr25:30279076-30278999 (view UCSC Genome Browser custom track) |
| Alignm length: | 78 |
| Alignm identity: | 71 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.