Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 106-252 |
| Cow position: | chr27:27528944-27529085 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 12 |
| Conread position: | 109-230 |
| Cow position: | chr27:15454084-15453966 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 109-261 |
| Cow position: | chr27:23148039-23147883 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 110-231 |
| Cow position: | chr27:26087191-26087071 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 110-231 |
| Cow position: | chr27:31153684-31153804 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 110-240 |
| Cow position: | chr27:6106579-6106448 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 125 |
| Conread position: | 110-247 |
| Cow position: | chr27:2949450-2949577 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 110-250 |
| Cow position: | chr27:20828835-20828971 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 110-256 |
| Cow position: | chr27:17397579-17397724 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 110-263 |
| Cow position: | chr27:1184302-1184454 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 110-263 |
| Cow position: | chr27:26939952-26939797 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 111-242 |
| Cow position: | chr27:23485086-23484958 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 112-252 |
| Cow position: | chr27:24303813-24303672 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 112-257 |
| Cow position: | chr27:20354476-20354324 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 112-263 |
| Cow position: | chr27:16965451-16965292 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 116-252 |
| Cow position: | chr27:4720261-4720397 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 19 |
| Conread position: | 116-263 |
| Cow position: | chr27:23477816-23477661 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 21 |
| Conread position: | 117-225 |
| Cow position: | chr27:24223820-24223712 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-231 |
| Cow position: | chr27:26617277-26617166 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 117-257 |
| Cow position: | chr27:22220422-22220273 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 118-226 |
| Cow position: | chr27:26315274-26315384 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 119-223 |
| Cow position: | chr27:22150828-22150934 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-225 |
| Cow position: | chr27:15003112-15003222 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 119-226 |
| Cow position: | chr27:7412259-7412149 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 119-229 |
| Cow position: | chr27:31210415-31210303 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 119-240 |
| Cow position: | chr27:19576457-19576580 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-241 |
| Cow position: | chr27:15668905-15669034 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 119-246 |
| Cow position: | chr27:9253247-9253377 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 119-246 |
| Cow position: | chr27:23527635-23527763 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 119-246 |
| Cow position: | chr27:27606430-27606558 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 119-248 |
| Cow position: | chr27:11133953-11133824 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-255 |
| Cow position: | chr27:426836-426698 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 85, 116 |
| Conread position: | 119-255 |
| Cow position: | chr27:22748194-22748057 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 80, 111 |
| Conread position: | 119-261 |
| Cow position: | chr27:7425322-7425471 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 120-225 |
| Cow position: | chr27:178728-178620 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 120-229 |
| Cow position: | chr27:21984215-21984109 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 120-229 |
| Cow position: | chr27:24952089-24952199 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 120-231 |
| Cow position: | chr27:29614907-29614792 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 120-244 |
| Cow position: | chr27:26317931-26317805 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 120-253 |
| Cow position: | chr27:10581400-10581266 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 120-259 |
| Cow position: | chr27:11480771-11480913 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 122-263 |
| Cow position: | chr27:24237104-24236965 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 125-263 |
| Cow position: | chr27:9504417-9504272 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 127-263 |
| Cow position: | chr27:23918177-23918313 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 139-231 |
| Cow position: | chr27:20241412-20241504 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 84 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 145-263 |
| Cow position: | chr27:24358180-24358060 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 150-263 |
| Cow position: | chr27:19741556-19741671 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 76 |
Show alignments to all cow chromosomes.