Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 95-242 |
| Cow position: | chr4:3341012-3341161 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 103-243 |
| Cow position: | chr4:22701742-22701602 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 108-243 |
| Cow position: | chr4:22071598-22071463 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 109-244 |
| Cow position: | chr4:56395588-56395725 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 109-245 |
| Cow position: | chr4:3519497-3519629 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 14 |
| Conread position: | 110-226 |
| Cow position: | chr4:3688002-3688121 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 110-256 |
| Cow position: | chr4:45386895-45387041 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 110-263 |
| Cow position: | chr4:18952050-18952207 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 123 |
| Conread position: | 112-227 |
| Cow position: | chr4:34310384-34310272 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 113-248 |
| Cow position: | chr4:5907998-5908135 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 113-250 |
| Cow position: | chr4:20246119-20246262 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 114-255 |
| Cow position: | chr4:43710082-43709935 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 115-263 |
| Cow position: | chr4:39000638-39000787 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 117-230 |
| Cow position: | chr4:19333467-19333579 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 117-231 |
| Cow position: | chr4:42423724-42423611 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 117-237 |
| Cow position: | chr4:11969534-11969658 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 117-244 |
| Cow position: | chr4:35982079-35982205 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 20 |
| Conread position: | 119-223 |
| Cow position: | chr4:17186268-17186159 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-223 |
| Cow position: | chr4:42374073-42373966 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 119-224 |
| Cow position: | chr4:61193258-61193154 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 119-225 |
| Cow position: | chr4:25769355-25769250 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-226 |
| Cow position: | chr4:18098979-18098869 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 119-226 |
| Cow position: | chr4:26659383-26659492 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 119-226 |
| Cow position: | chr4:34544389-34544497 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-226 |
| Cow position: | chr4:34919191-34919082 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-226 |
| Cow position: | chr4:47048200-47048306 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-227 |
| Cow position: | chr4:48486077-48486189 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 119-230 |
| Cow position: | chr4:275527-275640 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 119-230 |
| Cow position: | chr4:8182554-8182438 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 119-230 |
| Cow position: | chr4:12666113-12666227 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 119-241 |
| Cow position: | chr4:19578470-19578590 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-243 |
| Cow position: | chr4:42608821-42608947 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 117 |
| Conread position: | 119-244 |
| Cow position: | chr4:46404825-46404703 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-246 |
| Cow position: | chr4:19119100-19119228 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 119-246 |
| Cow position: | chr4:30944037-30944165 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 119-248 |
| Cow position: | chr4:19328666-19328793 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 119-251 |
| Cow position: | chr4:19504011-19504140 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-252 |
| Cow position: | chr4:5276375-5276240 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 121 |
| Conread position: | 119-253 |
| Cow position: | chr4:4085028-4084895 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 119-259 |
| Cow position: | chr4:33838720-33838578 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-261 |
| Cow position: | chr4:19463627-19463774 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 110 |
| Conread position: | 119-263 |
| Cow position: | chr4:36070785-36070931 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 120-226 |
| Cow position: | chr4:51026434-51026543 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 120-227 |
| Cow position: | chr4:51851296-51851405 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 83, 24 |
| Conread position: | 120-230 |
| Cow position: | chr4:10558620-10558732 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 120-230 |
| Cow position: | chr4:28854191-28854080 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 120-231 |
| Cow position: | chr4:38935442-38935555 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 120-245 |
| Cow position: | chr4:2681413-2681537 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 120-246 |
| Cow position: | chr4:30172143-30172017 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 120-249 |
| Cow position: | chr4:31177908-31178035 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 120-250 |
| Cow position: | chr4:47305161-47305297 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 120-254 |
| Cow position: | chr4:45629963-45629822 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 120-257 |
| Cow position: | chr4:43579329-43579194 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 122-230 |
| Cow position: | chr4:10786055-10785944 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 124-227 |
| Cow position: | chr4:38822230-38822125 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 124-249 |
| Cow position: | chr4:53830566-53830695 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 125-242 |
| Cow position: | chr4:38209886-38209768 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 125-256 |
| Cow position: | chr4:69497204-69497339 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 127-247 |
| Cow position: | chr4:33151575-33151697 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 68, 104 |
| Conread position: | 127-250 |
| Cow position: | chr4:69478319-69478445 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 127-251 |
| Cow position: | chr4:10895542-10895416 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 128-250 |
| Cow position: | chr4:42642440-42642314 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 132-256 |
| Cow position: | chr4:39007595-39007717 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 132-258 |
| Cow position: | chr4:42698118-42697996 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 137-250 |
| Cow position: | chr4:64336178-64336068 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 94 |
Show alignments to all cow chromosomes.