Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 97-256 |
| Cow position: | chr5:60596018-60595858 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 53 |
| Conread position: | 104-244 |
| Cow position: | chr5:21237789-21237649 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 7 |
| Conread position: | 104-260 |
| Cow position: | chr5:18578996-18579151 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 106-246 |
| Cow position: | chr5:56959285-56959426 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 110-224 |
| Cow position: | chr5:21828974-21829089 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 110-226 |
| Cow position: | chr5:51298606-51298488 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 50 |
| Conread position: | 110-230 |
| Cow position: | chr5:6876859-6876734 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 110-238 |
| Cow position: | chr5:52849192-52849319 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 110-241 |
| Cow position: | chr5:24996116-24995979 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 110-248 |
| Cow position: | chr5:63300185-63300327 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 111-226 |
| Cow position: | chr5:8149200-8149082 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 111-249 |
| Cow position: | chr5:6438916-6438778 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 112-249 |
| Cow position: | chr5:4280556-4280696 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 114-232 |
| Cow position: | chr5:31481544-31481665 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 115-224 |
| Cow position: | chr5:69099832-69099944 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 115-261 |
| Cow position: | chr5:3627067-3626920 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 117-227 |
| Cow position: | chr5:35190224-35190334 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 117-230 |
| Cow position: | chr5:56070973-56071088 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 117-238 |
| Cow position: | chr5:20736763-20736639 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 83, 31 |
| Conread position: | 117-238 |
| Cow position: | chr5:22667185-22667309 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 117-262 |
| Cow position: | chr5:66287059-66287203 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 119-225 |
| Cow position: | chr5:17104966-17105071 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 119-225 |
| Cow position: | chr5:74690138-74690026 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 119-226 |
| Cow position: | chr5:47601928-47602035 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 119-227 |
| Cow position: | chr5:21721354-21721248 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-227 |
| Cow position: | chr5:74049940-74050052 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 119-230 |
| Cow position: | chr5:46479126-46479016 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-230 |
| Cow position: | chr5:57497308-57497194 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 119-231 |
| Cow position: | chr5:34787690-34787804 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 119-231 |
| Cow position: | chr5:45845572-45845459 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-237 |
| Cow position: | chr5:48104378-48104498 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 119-239 |
| Cow position: | chr5:63940332-63940215 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 119-241 |
| Cow position: | chr5:26147707-26147827 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 6, 42 |
| Conread position: | 119-241 |
| Cow position: | chr5:55414323-55414199 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 6, 26 |
| Conread position: | 119-243 |
| Cow position: | chr5:34288137-34288011 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 119-245 |
| Cow position: | chr5:59626856-59626726 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 119-246 |
| Cow position: | chr5:6245547-6245418 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 119-246 |
| Cow position: | chr5:26549024-26548896 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 119-246 |
| Cow position: | chr5:54340882-54341011 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 119-250 |
| Cow position: | chr5:74039888-74039757 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 119-252 |
| Cow position: | chr5:57074215-57074086 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 119-254 |
| Cow position: | chr5:38833237-38833368 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-259 |
| Cow position: | chr5:36038885-36038747 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 119-259 |
| Cow position: | chr5:46512653-46512508 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 119-263 |
| Cow position: | chr5:67339999-67340144 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 120-234 |
| Cow position: | chr5:65941133-65941014 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 120-241 |
| Cow position: | chr5:12562639-12562520 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 120-244 |
| Cow position: | chr5:58487492-58487615 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 83, 29 |
| Conread position: | 120-245 |
| Cow position: | chr5:14000762-14000884 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 11 |
| Conread position: | 120-254 |
| Cow position: | chr5:56624400-56624259 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 120 |
| Conread position: | 120-260 |
| Cow position: | chr5:45854614-45854763 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 121-261 |
| Cow position: | chr5:55949561-55949419 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 113 |
| Conread position: | 122-226 |
| Cow position: | chr5:26467748-26467854 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 124-243 |
| Cow position: | chr5:57561749-57561870 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 124-256 |
| Cow position: | chr5:37971300-37971165 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 124-263 |
| Cow position: | chr5:56549487-56549630 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 125-259 |
| Cow position: | chr5:3817565-3817427 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 130-251 |
| Cow position: | chr5:32975892-32976014 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 132-230 |
| Cow position: | chr5:37253553-37253654 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 140-236 |
| Cow position: | chr5:42480386-42480288 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 146-257 |
| Cow position: | chr5:39815351-39815244 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 150-247 |
| Cow position: | chr5:57627096-57627194 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.