Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 90-230 |
| Cow position: | chr6:18903931-18903793 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 11 |
| Conread position: | 103-227 |
| Cow position: | chr6:19225272-19225151 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 110-230 |
| Cow position: | chr6:43540141-43540018 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 110-247 |
| Cow position: | chr6:12761399-12761541 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 110-252 |
| Cow position: | chr6:17414324-17414186 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 111-230 |
| Cow position: | chr6:69145466-69145587 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 115-241 |
| Cow position: | chr6:35342056-35341933 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 117-223 |
| Cow position: | chr6:67069683-67069578 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 117-225 |
| Cow position: | chr6:50504584-50504695 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 117-242 |
| Cow position: | chr6:23696128-23696248 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 117-254 |
| Cow position: | chr6:30024013-30024144 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 119-198 |
| Cow position: | chr6:53235523-53235444 (view UCSC Genome Browser custom track) |
| Alignm length: | 81 |
| Alignm identity: | 74 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 119-223 |
| Cow position: | chr6:21083411-21083304 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 119-229 |
| Cow position: | chr6:55646816-55646706 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 25 |
| Conread position: | 119-230 |
| Cow position: | chr6:32006325-32006212 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-230 |
| Cow position: | chr6:48661243-48661131 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 119-230 |
| Cow position: | chr6:59759300-59759413 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-230 |
| Cow position: | chr6:61631478-61631364 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 119-230 |
| Cow position: | chr6:66058578-66058465 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 119-231 |
| Cow position: | chr6:48097469-48097359 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-243 |
| Cow position: | chr6:19264369-19264245 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 119-246 |
| Cow position: | chr6:52478281-52478150 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 119-255 |
| Cow position: | chr6:6168817-6168957 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 119-257 |
| Cow position: | chr6:13653473-13653615 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 119-260 |
| Cow position: | chr6:57320468-57320326 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 113 |
| Conread position: | 119-261 |
| Cow position: | chr6:50577650-50577789 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 119-262 |
| Cow position: | chr6:694014-693871 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 119-262 |
| Cow position: | chr6:21293367-21293219 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 119-263 |
| Cow position: | chr6:25614961-25614810 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 119-263 |
| Cow position: | chr6:56825658-56825806 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 120-224 |
| Cow position: | chr6:10105848-10105745 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 120-227 |
| Cow position: | chr6:53401717-53401821 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 120-238 |
| Cow position: | chr6:31847110-31846992 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 120-245 |
| Cow position: | chr6:18954955-18954833 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 120-252 |
| Cow position: | chr6:42034902-42035037 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 120-256 |
| Cow position: | chr6:54828192-54828052 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 120-263 |
| Cow position: | chr6:16627865-16628006 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 121-252 |
| Cow position: | chr6:57546097-57545959 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 124-231 |
| Cow position: | chr6:63233658-63233762 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 124-248 |
| Cow position: | chr6:55196347-55196477 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 116 |
| Conread position: | 124-261 |
| Cow position: | chr6:62805777-62805919 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 115 |
| Conread position: | 124-263 |
| Cow position: | chr6:12928277-12928417 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 124-263 |
| Cow position: | chr6:38550492-38550351 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 112 |
| Conread position: | 126-252 |
| Cow position: | chr6:62224558-62224687 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 127-248 |
| Cow position: | chr6:36202958-36203085 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 135-256 |
| Cow position: | chr6:31695389-31695513 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 83 |
| Conread position: | 139-231 |
| Cow position: | chr6:120394-120482 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 149-248 |
| Cow position: | chr6:54990513-54990414 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 76 |
Show alignments to all cow chromosomes.