Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 103-245 |
| Cow position: | chr8:19616396-19616535 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 109-243 |
| Cow position: | chr8:29934140-29934273 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 110-227 |
| Cow position: | chr8:37191177-37191295 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 110-229 |
| Cow position: | chr8:55716844-55716966 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 87, 34 |
| Conread position: | 110-230 |
| Cow position: | chr8:3887424-3887546 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 110-230 |
| Cow position: | chr8:35971941-35972064 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 110-232 |
| Cow position: | chr8:28229382-28229259 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 110-242 |
| Cow position: | chr8:8189967-8189832 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 110-243 |
| Cow position: | chr8:55089757-55089631 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 110-244 |
| Cow position: | chr8:58058835-58058972 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 110-252 |
| Cow position: | chr8:27914591-27914454 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 110-252 |
| Cow position: | chr8:46274577-46274432 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 110-253 |
| Cow position: | chr8:3686249-3686107 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 129, 85 |
| Conread position: | 111-231 |
| Cow position: | chr8:40280775-40280903 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 112-229 |
| Cow position: | chr8:6224344-6224228 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 114-231 |
| Cow position: | chr8:24328748-24328631 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 119-225 |
| Cow position: | chr8:20107690-20107584 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 119-226 |
| Cow position: | chr8:10970935-10971046 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 119-230 |
| Cow position: | chr8:6675295-6675409 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 119-230 |
| Cow position: | chr8:29029975-29029862 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 55 |
| Conread position: | 119-230 |
| Cow position: | chr8:29173310-29173422 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 119-230 |
| Cow position: | chr8:47707414-47707307 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-230 |
| Cow position: | chr8:48527860-48527749 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 119-231 |
| Cow position: | chr8:38572168-38572055 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-231 |
| Cow position: | chr8:61157129-61157015 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 119-239 |
| Cow position: | chr8:46616488-46616609 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-240 |
| Cow position: | chr8:20850255-20850135 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-242 |
| Cow position: | chr8:23018415-23018291 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 119-245 |
| Cow position: | chr8:27955051-27954923 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 119-246 |
| Cow position: | chr8:30868631-30868498 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 119-250 |
| Cow position: | chr8:49305649-49305514 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 119-250 |
| Cow position: | chr8:57041530-57041398 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-251 |
| Cow position: | chr8:5730133-5730264 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-252 |
| Cow position: | chr8:58393663-58393795 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-254 |
| Cow position: | chr8:32130333-32130471 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-259 |
| Cow position: | chr8:44449502-44449363 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 26 |
| Conread position: | 119-259 |
| Cow position: | chr8:61848626-61848482 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 119-263 |
| Cow position: | chr8:834518-834661 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 120-230 |
| Cow position: | chr8:1304008-1304123 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 120-238 |
| Cow position: | chr8:46235810-46235927 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 120-242 |
| Cow position: | chr8:21917238-21917118 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 120-247 |
| Cow position: | chr8:4992650-4992781 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 113 |
| Conread position: | 120-248 |
| Cow position: | chr8:39545101-39545228 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 120-255 |
| Cow position: | chr8:26305765-26305624 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 110 |
| Conread position: | 120-256 |
| Cow position: | chr8:41140731-41140865 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 120-259 |
| Cow position: | chr8:51511753-51511615 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 113 |
| Conread position: | 120-261 |
| Cow position: | chr8:31985362-31985504 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 120-263 |
| Cow position: | chr8:10832332-10832179 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 121-230 |
| Cow position: | chr8:55885076-55885186 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 122-260 |
| Cow position: | chr8:3821881-3821739 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 117 |
| Conread position: | 124-229 |
| Cow position: | chr8:6477953-6478059 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 124-231 |
| Cow position: | chr8:61211533-61211639 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 124-255 |
| Cow position: | chr8:28322076-28322213 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 127-247 |
| Cow position: | chr8:5665583-5665457 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 127-254 |
| Cow position: | chr8:10764841-10764714 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 128-245 |
| Cow position: | chr8:4206067-4206186 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 131-255 |
| Cow position: | chr8:54303131-54303251 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 132-253 |
| Cow position: | chr8:23370206-23370082 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 135-245 |
| Cow position: | chr8:38128138-38128249 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 141-260 |
| Cow position: | chr8:39380171-39380049 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 150-259 |
| Cow position: | chr8:39872870-39872760 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 150-260 |
| Cow position: | chr8:11733864-11733977 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.