Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 108-227 |
| Cow position: | chr9:45285588-45285711 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 110-227 |
| Cow position: | chr9:28773087-28772969 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 110-230 |
| Cow position: | chr9:9596004-9596125 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 110-230 |
| Cow position: | chr9:51620393-51620269 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 110-236 |
| Cow position: | chr9:9985137-9985012 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 110-244 |
| Cow position: | chr9:6189417-6189549 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 110-249 |
| Cow position: | chr9:12268980-12268844 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 110-252 |
| Cow position: | chr9:38792963-38792821 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 115 |
| Conread position: | 110-258 |
| Cow position: | chr9:55577656-55577508 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 90, 25 |
| Conread position: | 111-253 |
| Cow position: | chr9:6237546-6237687 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 112-250 |
| Cow position: | chr9:34410449-34410587 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 116-253 |
| Cow position: | chr9:34964792-34964930 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 117-230 |
| Cow position: | chr9:19771303-19771185 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 117-230 |
| Cow position: | chr9:22360805-22360697 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 117-246 |
| Cow position: | chr9:33584744-33584875 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 119-221 |
| Cow position: | chr9:43159691-43159589 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 119-225 |
| Cow position: | chr9:5263439-5263334 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 26 |
| Conread position: | 119-227 |
| Cow position: | chr9:57131434-57131326 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 119-229 |
| Cow position: | chr9:24887145-24887031 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 119-230 |
| Cow position: | chr9:4341220-4341331 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 119-230 |
| Cow position: | chr9:21816470-21816356 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 119-230 |
| Cow position: | chr9:37199066-37198952 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 119-236 |
| Cow position: | chr9:42508766-42508647 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 119-244 |
| Cow position: | chr9:39011530-39011652 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 119-249 |
| Cow position: | chr9:34286738-34286605 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 119-251 |
| Cow position: | chr9:24079241-24079107 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 119-252 |
| Cow position: | chr9:45141661-45141792 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 119-253 |
| Cow position: | chr9:26279230-26279371 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 119-254 |
| Cow position: | chr9:32052215-32052076 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 119-254 |
| Cow position: | chr9:41728199-41728060 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 119-262 |
| Cow position: | chr9:58132013-58132155 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-263 |
| Cow position: | chr9:11380707-11380853 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 120-231 |
| Cow position: | chr9:52763822-52763930 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 103, 11 |
| Conread position: | 120-246 |
| Cow position: | chr9:7543325-7543448 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 120-247 |
| Cow position: | chr9:44709767-44709641 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 120-248 |
| Cow position: | chr9:28747582-28747708 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 120-249 |
| Cow position: | chr9:19657038-19657167 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 120-249 |
| Cow position: | chr9:60138733-60138603 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 121-230 |
| Cow position: | chr9:59897530-59897421 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 121-261 |
| Cow position: | chr9:11506234-11506088 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 122-252 |
| Cow position: | chr9:30194947-30194816 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 124-260 |
| Cow position: | chr9:48046472-48046330 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 130-227 |
| Cow position: | chr9:43757468-43757372 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 131-230 |
| Cow position: | chr9:22440549-22440648 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 131-231 |
| Cow position: | chr9:9516822-9516923 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 136-230 |
| Cow position: | chr9:26086645-26086548 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 86 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 137-263 |
| Cow position: | chr9:53433222-53433094 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 95 |
| Conread position: | 139-248 |
| Cow position: | chr9:64140645-64140754 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 140-253 |
| Cow position: | chr9:50607014-50607127 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 140-263 |
| Cow position: | chr9:33101184-33101312 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 89 |
| Conread position: | 149-250 |
| Cow position: | chr9:36849538-36849434 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.