Cow genome map
| Conread name: | rlnt35c_a20.y1 |
| Conread position: | 99-230 |
| Cow position: | chrX:48372397-48372270 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 107-244 |
| Cow position: | chrX:34991471-34991606 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 108-226 |
| Cow position: | chrX:9252055-9251934 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 110-221 |
| Cow position: | chrX:4486916-4486800 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 110-225 |
| Cow position: | chrX:31279816-31279699 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 110-226 |
| Cow position: | chrX:23471758-23471639 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 110-230 |
| Cow position: | chrX:20584424-20584545 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 110-230 |
| Cow position: | chrX:39642515-39642394 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 110-230 |
| Cow position: | chrX:44095527-44095646 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 110-250 |
| Cow position: | chrX:27206908-27207045 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 110-253 |
| Cow position: | chrX:3130755-3130898 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 112-225 |
| Cow position: | chrX:8869292-8869176 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 112-249 |
| Cow position: | chrX:47345439-47345580 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 130 |
| Conread position: | 113-220 |
| Cow position: | chrX:42216520-42216410 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 114-256 |
| Cow position: | chrX:44569540-44569683 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 114-262 |
| Cow position: | chrX:28067963-28068117 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 116-231 |
| Cow position: | chrX:38094407-38094292 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 5, 28 |
| Conread position: | 117-226 |
| Cow position: | chrX:10252085-10251973 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 117-229 |
| Cow position: | chrX:37072504-37072618 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 117-230 |
| Cow position: | chrX:34792197-34792091 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 117-241 |
| Cow position: | chrX:23358999-23358874 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 20 |
| Conread position: | 117-241 |
| Cow position: | chrX:24633810-24633929 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 30, 81 |
| Conread position: | 117-242 |
| Cow position: | chrX:42086942-42087070 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 117-253 |
| Cow position: | chrX:14135793-14135932 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 117-259 |
| Cow position: | chrX:15534097-15533948 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 119-225 |
| Cow position: | chrX:31480085-31480194 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 119-226 |
| Cow position: | chrX:1466279-1466392 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 119-226 |
| Cow position: | chrX:20583783-20583889 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-227 |
| Cow position: | chrX:45502263-45502365 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 119-229 |
| Cow position: | chrX:29542110-29541996 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 119-230 |
| Cow position: | chrX:4750216-4750106 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 8 |
| Conread position: | 119-230 |
| Cow position: | chrX:28940362-28940477 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 119-240 |
| Cow position: | chrX:33855103-33854983 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-241 |
| Cow position: | chrX:11656198-11656322 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 119-241 |
| Cow position: | chrX:27145721-27145844 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 119-241 |
| Cow position: | chrX:37176991-37177110 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-244 |
| Cow position: | chrX:5118381-5118252 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 119-245 |
| Cow position: | chrX:2936074-2936201 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 119-245 |
| Cow position: | chrX:27431801-27431675 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 119-251 |
| Cow position: | chrX:5919613-5919739 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 119-251 |
| Cow position: | chrX:13177359-13177233 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 119-253 |
| Cow position: | chrX:42380995-42380853 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 119-254 |
| Cow position: | chrX:12979717-12979577 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 119-255 |
| Cow position: | chrX:20957355-20957494 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 119-255 |
| Cow position: | chrX:27668841-27668708 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 119-259 |
| Cow position: | chrX:31436591-31436730 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 120-230 |
| Cow position: | chrX:231900-231793 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 120-238 |
| Cow position: | chrX:11781570-11781685 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 120-244 |
| Cow position: | chrX:8759740-8759871 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 120-250 |
| Cow position: | chrX:35658914-35659048 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 120-251 |
| Cow position: | chrX:26205330-26205204 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 120-252 |
| Cow position: | chrX:32877257-32877126 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 120-258 |
| Cow position: | chrX:41215440-41215585 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 120-261 |
| Cow position: | chrX:47730600-47730743 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 117 |
| Conread position: | 120-263 |
| Cow position: | chrX:12095654-12095506 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 120-263 |
| Cow position: | chrX:47100479-47100330 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 121 |
| Conread position: | 121-227 |
| Cow position: | chrX:25207738-25207631 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 79, 38 |
| Conread position: | 121-241 |
| Cow position: | chrX:37749865-37749752 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 121-259 |
| Cow position: | chrX:34504930-34504792 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 22 |
| Conread position: | 122-224 |
| Cow position: | chrX:11602365-11602260 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 122-238 |
| Cow position: | chrX:27442419-27442297 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 123-263 |
| Cow position: | chrX:40337032-40337176 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 124-224 |
| Cow position: | chrX:13923986-13924088 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 124-240 |
| Cow position: | chrX:16801144-16801024 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 124-247 |
| Cow position: | chrX:11674232-11674362 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 124-251 |
| Cow position: | chrX:41011020-41011141 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 73, 7 |
| Conread position: | 124-253 |
| Cow position: | chrX:35985940-35986069 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 124-256 |
| Cow position: | chrX:35509556-35509420 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 124-263 |
| Cow position: | chrX:6855981-6856126 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 124-263 |
| Cow position: | chrX:20339771-20339629 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 125-260 |
| Cow position: | chrX:47855103-47855238 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 126-262 |
| Cow position: | chrX:15546006-15546147 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 127-263 |
| Cow position: | chrX:7722102-7722238 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 130-256 |
| Cow position: | chrX:47123181-47123309 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 130-259 |
| Cow position: | chrX:40480719-40480587 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 132-253 |
| Cow position: | chrX:45228600-45228726 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 137-260 |
| Cow position: | chrX:38726075-38726198 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 142-230 |
| Cow position: | chrX:34432660-34432570 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 147-250 |
| Cow position: | chrX:32942928-32942828 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 91, 48 |
| Conread position: | 149-244 |
| Cow position: | chrX:7351453-7351547 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 154-240 |
| Cow position: | chrX:5803656-5803741 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.