Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 231-355 |
| Cow position: | chr11:12318621-12318745 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-357 |
| Cow position: | chr11:21470219-21470093 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-374 |
| Cow position: | chr11:34018408-34018266 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 231-374 |
| Cow position: | chr11:40405647-40405790 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-385 |
| Cow position: | chr11:49552746-49552899 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-400 |
| Cow position: | chr11:44253479-44253314 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 231-442 |
| Cow position: | chr11:87142987-87142760 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 231-447 |
| Cow position: | chr11:7117817-7117584 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 231-447 |
| Cow position: | chr11:32079382-32079614 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 231-447 |
| Cow position: | chr11:37802468-37802238 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 231-450 |
| Cow position: | chr11:4062506-4062732 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 153, 13 |
| Conread position: | 231-470 |
| Cow position: | chr11:26069636-26069889 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-470 |
| Cow position: | chr11:26073564-26073810 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 151, 78 |
| Conread position: | 231-471 |
| Cow position: | chr11:11590372-11590117 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 142, 72 |
| Conread position: | 231-471 |
| Cow position: | chr11:31754656-31754897 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 90 |
| Conread position: | 231-481 |
| Cow position: | chr11:67845166-67845433 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 231-482 |
| Cow position: | chr11:3494395-3494126 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:17106276-17106545 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:17118937-17119207 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:17547563-17547300 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 151, 234 |
| Conread position: | 231-482 |
| Cow position: | chr11:19062671-19062940 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:28228362-28228631 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:30253629-30253366 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 231-482 |
| Cow position: | chr11:32453237-32452965 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:44517460-44517727 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:44581937-44582205 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:47738142-47738403 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:50836262-50836531 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:52420797-52420539 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 132, 180 |
| Conread position: | 231-482 |
| Cow position: | chr11:57626646-57626915 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 231-482 |
| Cow position: | chr11:61399699-61399948 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 231-482 |
| Cow position: | chr11:73134708-73134440 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 231-483 |
| Cow position: | chr11:11989535-11989269 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 151, 68 |
| Conread position: | 231-484 |
| Cow position: | chr11:1488766-1489033 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 154, 229 |
| Conread position: | 231-484 |
| Cow position: | chr11:10848856-10848587 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr11:17281073-17281345 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 231-484 |
| Cow position: | chr11:23249064-23249335 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 231-484 |
| Cow position: | chr11:26548934-26548660 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 142, 104 |
| Conread position: | 231-484 |
| Cow position: | chr11:35894500-35894768 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 142, 223 |
| Conread position: | 231-484 |
| Cow position: | chr11:38834042-38834313 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 231-484 |
| Cow position: | chr11:49238550-49238816 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 220 |
| Conread position: | 231-484 |
| Cow position: | chr11:53430629-53430896 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 7, 202 |
| Conread position: | 231-484 |
| Cow position: | chr11:67155083-67154815 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 139, 51 |
| Conread position: | 231-484 |
| Cow position: | chr11:72309634-72309903 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-484 |
| Cow position: | chr11:85392428-85392699 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 232-379 |
| Cow position: | chr11:44155596-44155742 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 232-427 |
| Cow position: | chr11:39805139-39804947 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 103 |
| Conread position: | 232-460 |
| Cow position: | chr11:12356997-12357241 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-471 |
| Cow position: | chr11:41234419-41234165 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 141, 243 |
| Conread position: | 232-484 |
| Cow position: | chr11:64356203-64355949 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 232-484 |
| Cow position: | chr11:71331004-71330730 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 234-447 |
| Cow position: | chr11:31863487-31863258 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 234-484 |
| Cow position: | chr11:19101091-19101358 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 147, 221 |
| Conread position: | 237-482 |
| Cow position: | chr11:41169296-41169559 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 237-484 |
| Cow position: | chr11:29667199-29667471 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 139, 41 |
| Conread position: | 238-482 |
| Cow position: | chr11:20732836-20733101 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 239-484 |
| Cow position: | chr11:47758880-47759145 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 121, 53 |
| Conread position: | 251-482 |
| Cow position: | chr11:10056885-10056640 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 135, 185 |
| Conread position: | 251-484 |
| Cow position: | chr11:25393569-25393328 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 90, 25 |
| Conread position: | 253-480 |
| Cow position: | chr11:4054946-4055187 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 271-482 |
| Cow position: | chr11:53285807-53286032 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 105, 159 |
| Conread position: | 293-480 |
| Cow position: | chr11:40774671-40774862 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.