Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 231-385 |
| Cow position: | chr13:9298919-9298765 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-388 |
| Cow position: | chr13:34869445-34869288 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-388 |
| Cow position: | chr13:36348663-36348820 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-399 |
| Cow position: | chr13:15449676-15449842 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 146, 20 |
| Conread position: | 231-404 |
| Cow position: | chr13:5624274-5624448 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 153, 166 |
| Conread position: | 231-470 |
| Cow position: | chr13:11797234-11797488 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 151, 244 |
| Conread position: | 231-471 |
| Cow position: | chr13:11388470-11388216 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 146, 180 |
| Conread position: | 231-476 |
| Cow position: | chr13:48359099-48358840 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 153, 78 |
| Conread position: | 231-481 |
| Cow position: | chr13:60648333-60648600 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 151, 16 |
| Conread position: | 231-482 |
| Cow position: | chr13:679221-678955 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 151, 59 |
| Conread position: | 231-482 |
| Cow position: | chr13:5500526-5500794 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr13:13326399-13326133 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 231-482 |
| Cow position: | chr13:21697737-21697468 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr13:32735719-32735966 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 192, 155 |
| Conread position: | 231-482 |
| Cow position: | chr13:33524483-33524752 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 231-482 |
| Cow position: | chr13:50192925-50193191 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 231-483 |
| Cow position: | chr13:35758753-35758488 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 151, 14 |
| Conread position: | 231-483 |
| Cow position: | chr13:43981612-43981879 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 246 |
| Conread position: | 231-483 |
| Cow position: | chr13:47575565-47575297 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr13:11793605-11793878 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 142, 264 |
| Conread position: | 231-484 |
| Cow position: | chr13:13901339-13901070 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 129, 174 |
| Conread position: | 231-484 |
| Cow position: | chr13:14186473-14186202 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr13:14401635-14401904 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr13:20540781-20541054 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 231-484 |
| Cow position: | chr13:31610844-31611106 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 157, 39 |
| Conread position: | 231-484 |
| Cow position: | chr13:32923661-32923930 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 236 |
| Conread position: | 231-484 |
| Cow position: | chr13:33334847-33335108 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 142, 39 |
| Conread position: | 231-484 |
| Cow position: | chr13:34031070-34030809 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 146, 236 |
| Conread position: | 231-484 |
| Cow position: | chr13:34343379-34343108 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 231-484 |
| Cow position: | chr13:42090220-42090488 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 128, 241 |
| Conread position: | 231-484 |
| Cow position: | chr13:43590787-43590523 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 154, 21 |
| Conread position: | 231-484 |
| Cow position: | chr13:60424221-60423955 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 159, 20 |
| Conread position: | 232-442 |
| Cow position: | chr13:30653954-30654171 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 199 |
| Conread position: | 232-466 |
| Cow position: | chr13:6666667-6666917 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 232-484 |
| Cow position: | chr13:4942857-4942587 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-484 |
| Cow position: | chr13:9046220-9045963 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 232-484 |
| Cow position: | chr13:16253041-16253314 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 152, 19 |
| Conread position: | 232-484 |
| Cow position: | chr13:34050178-34049939 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 233-484 |
| Cow position: | chr13:31729432-31729690 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 149, 131 |
| Conread position: | 233-484 |
| Cow position: | chr13:34040863-34041132 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 235-482 |
| Cow position: | chr13:21838738-21838994 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 149, 175 |
| Conread position: | 235-482 |
| Cow position: | chr13:32983875-32984140 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 235-482 |
| Cow position: | chr13:34324109-34324371 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 235-482 |
| Cow position: | chr13:60468896-60468630 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 237-481 |
| Cow position: | chr13:3482365-3482609 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 68, 63 |
| Conread position: | 237-482 |
| Cow position: | chr13:34938904-34938645 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 139, 86 |
| Conread position: | 237-482 |
| Cow position: | chr13:50110920-50110657 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 238-482 |
| Cow position: | chr13:31508373-31508114 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 258-482 |
| Cow position: | chr13:42217236-42217478 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 261-470 |
| Cow position: | chr13:50661716-50661493 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 270-482 |
| Cow position: | chr13:4485223-4484996 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 270-483 |
| Cow position: | chr13:31690726-31690939 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 181, 110 |
| Conread position: | 278-482 |
| Cow position: | chr13:49975091-49974870 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 33 |
Show alignments to all cow chromosomes.