Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 230-484 |
| Cow position: | chr16:43896257-43896527 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 231-388 |
| Cow position: | chr16:20193168-20193325 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-456 |
| Cow position: | chr16:41685254-41685489 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 60, 10 |
| Conread position: | 231-462 |
| Cow position: | chr16:5119015-5119262 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-469 |
| Cow position: | chr16:42735582-42735817 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 164, 14 |
| Conread position: | 231-471 |
| Cow position: | chr16:5871897-5871635 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 251 |
| Conread position: | 231-471 |
| Cow position: | chr16:25258806-25258552 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 166, 243 |
| Conread position: | 231-475 |
| Cow position: | chr16:28158571-28158320 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 145, 220 |
| Conread position: | 231-481 |
| Cow position: | chr16:12245347-12245594 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 193, 115 |
| Conread position: | 231-482 |
| Cow position: | chr16:5527382-5527650 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 142, 57 |
| Conread position: | 231-482 |
| Cow position: | chr16:5662843-5662574 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-482 |
| Cow position: | chr16:19778648-19778914 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-482 |
| Cow position: | chr16:27594511-27594242 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr16:28196237-28196506 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 231-482 |
| Cow position: | chr16:34531291-34531035 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr16:51085161-51084890 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 231-483 |
| Cow position: | chr16:5485727-5485463 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-483 |
| Cow position: | chr16:27732378-27732648 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 231-483 |
| Cow position: | chr16:51402872-51403142 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 231-484 |
| Cow position: | chr16:1566458-1566720 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:1861239-1860967 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 231-484 |
| Cow position: | chr16:2409930-2410201 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:3330933-3330672 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 150, 231 |
| Conread position: | 231-484 |
| Cow position: | chr16:7675454-7675716 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 149, 26 |
| Conread position: | 231-484 |
| Cow position: | chr16:8815104-8815372 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:10439262-10438991 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 127, 245 |
| Conread position: | 231-484 |
| Cow position: | chr16:12536948-12537215 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 151, 69 |
| Conread position: | 231-484 |
| Cow position: | chr16:14664809-14665080 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:15568261-15567989 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:16240290-16240554 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 231-484 |
| Cow position: | chr16:18618125-18618379 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 109, 101 |
| Conread position: | 231-484 |
| Cow position: | chr16:20202979-20202707 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:25086615-25086350 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 151, 57 |
| Conread position: | 231-484 |
| Cow position: | chr16:25342975-25342704 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:25442633-25442364 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:25456477-25456748 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 231-484 |
| Cow position: | chr16:29048026-29047758 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 145, 224 |
| Conread position: | 231-484 |
| Cow position: | chr16:40295163-40295427 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 157, 61 |
| Conread position: | 231-484 |
| Cow position: | chr16:49220914-49221171 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 159, 11 |
| Conread position: | 232-388 |
| Cow position: | chr16:27712182-27712337 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 232-464 |
| Cow position: | chr16:19149599-19149844 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 231 |
| Conread position: | 232-481 |
| Cow position: | chr16:37479853-37480120 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 127, 179 |
| Conread position: | 232-482 |
| Cow position: | chr16:18667389-18667123 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 154, 93 |
| Conread position: | 232-483 |
| Cow position: | chr16:26664728-26664490 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 187, 105 |
| Conread position: | 232-484 |
| Cow position: | chr16:2726212-2726480 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-484 |
| Cow position: | chr16:23534898-23535161 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 150, 230 |
| Conread position: | 232-484 |
| Cow position: | chr16:49233487-49233747 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 233 |
| Conread position: | 233-385 |
| Cow position: | chr16:7465606-7465454 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 233-470 |
| Cow position: | chr16:23809356-23809110 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 142, 189 |
| Conread position: | 233-482 |
| Cow position: | chr16:15186081-15185813 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 233-484 |
| Cow position: | chr16:18497314-18497584 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 234-471 |
| Cow position: | chr16:33526-33276 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 235-448 |
| Cow position: | chr16:28169322-28169550 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 147, 220 |
| Conread position: | 235-484 |
| Cow position: | chr16:1959622-1959882 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 235-484 |
| Cow position: | chr16:16270136-16270402 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 142, 52 |
| Conread position: | 236-380 |
| Cow position: | chr16:23250971-23251115 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-484 |
| Cow position: | chr16:2482137-2482401 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 237-483 |
| Cow position: | chr16:40556947-40557211 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 237-483 |
| Cow position: | chr16:54324337-54324601 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 237-484 |
| Cow position: | chr16:10967109-10967356 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 106, 51 |
| Conread position: | 237-484 |
| Cow position: | chr16:23984297-23984033 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 145, 77 |
| Conread position: | 237-484 |
| Cow position: | chr16:39824918-39824658 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 136, 80 |
| Conread position: | 238-375 |
| Cow position: | chr16:4474609-4474746 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 238-483 |
| Cow position: | chr16:9931729-9931466 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 244-484 |
| Cow position: | chr16:16898444-16898192 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 145, 213 |
| Conread position: | 251-483 |
| Cow position: | chr16:338166-337924 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 122, 46 |
| Conread position: | 251-484 |
| Cow position: | chr16:16519787-16520035 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 252-484 |
| Cow position: | chr16:838300-838051 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 254-466 |
| Cow position: | chr16:16229294-16229073 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 256-482 |
| Cow position: | chr16:2237790-2238029 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 124, 178 |
| Conread position: | 257-482 |
| Cow position: | chr16:1433165-1432924 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 125, 167 |
| Conread position: | 262-477 |
| Cow position: | chr16:29034911-29034685 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 270-464 |
| Cow position: | chr16:5890965-5890755 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 101, 0 |
Show alignments to all cow chromosomes.