Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 197-457 |
| Cow position: | chr17:22133879-22133601 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 230-482 |
| Cow position: | chr17:15141778-15142046 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 154, 78 |
| Conread position: | 230-484 |
| Cow position: | chr17:20403998-20403726 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 231-350 |
| Cow position: | chr17:22561475-22561356 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-350 |
| Cow position: | chr17:34159304-34159186 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 231-385 |
| Cow position: | chr17:136206-136052 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-385 |
| Cow position: | chr17:17257112-17257266 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-385 |
| Cow position: | chr17:19980558-19980712 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-388 |
| Cow position: | chr17:40018-39861 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-388 |
| Cow position: | chr17:2554697-2554854 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-471 |
| Cow position: | chr17:5228200-5227946 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 154, 100 |
| Conread position: | 231-481 |
| Cow position: | chr17:29302335-29302067 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 231-482 |
| Cow position: | chr17:183149-182885 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 87 |
| Conread position: | 231-482 |
| Cow position: | chr17:1881843-1881602 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 231-482 |
| Cow position: | chr17:2263717-2263450 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 231-482 |
| Cow position: | chr17:3654711-3654980 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 142, 244 |
| Conread position: | 231-482 |
| Cow position: | chr17:11784445-11784167 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 231-482 |
| Cow position: | chr17:14215470-14215716 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 104, 53 |
| Conread position: | 231-482 |
| Cow position: | chr17:23322870-23323139 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr17:24783740-24783471 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr17:27793205-27793472 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr17:34157700-34157431 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 152, 244 |
| Conread position: | 231-482 |
| Cow position: | chr17:39049793-39049524 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-483 |
| Cow position: | chr17:19267267-19267523 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 86, 224 |
| Conread position: | 231-483 |
| Cow position: | chr17:40806385-40806117 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 231-484 |
| Cow position: | chr17:3640327-3640597 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 231-484 |
| Cow position: | chr17:6070121-6069857 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 151, 234 |
| Conread position: | 231-484 |
| Cow position: | chr17:6261437-6261168 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 231-484 |
| Cow position: | chr17:15372790-15372527 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 152, 228 |
| Conread position: | 231-484 |
| Cow position: | chr17:15852271-15852000 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr17:16121028-16121273 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 118 |
| Conread position: | 231-484 |
| Cow position: | chr17:20098899-20099164 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 153, 244 |
| Conread position: | 231-484 |
| Cow position: | chr17:20489882-20489627 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 122, 67 |
| Conread position: | 231-484 |
| Cow position: | chr17:24028424-24028693 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 236 |
| Conread position: | 231-484 |
| Cow position: | chr17:28026926-28027199 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 232-335 |
| Cow position: | chr17:20231395-20231292 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-382 |
| Cow position: | chr17:4346002-4346152 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-482 |
| Cow position: | chr17:4061679-4061413 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 150, 65 |
| Conread position: | 232-484 |
| Cow position: | chr17:11086150-11086416 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 150, 233 |
| Conread position: | 232-484 |
| Cow position: | chr17:15326857-15326586 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 233-482 |
| Cow position: | chr17:14936395-14936661 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 232 |
| Conread position: | 233-484 |
| Cow position: | chr17:14241081-14240812 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 234-470 |
| Cow position: | chr17:732769-733017 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 139, 40 |
| Conread position: | 235-482 |
| Cow position: | chr17:2246512-2246772 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 235-484 |
| Cow position: | chr17:2077418-2077687 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 235-484 |
| Cow position: | chr17:20086202-20086462 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 237-442 |
| Cow position: | chr17:6121357-6121149 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 147, 173 |
| Conread position: | 237-456 |
| Cow position: | chr17:42267225-42266999 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 163, 38 |
| Conread position: | 237-484 |
| Cow position: | chr17:1656310-1656553 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 237-484 |
| Cow position: | chr17:8203502-8203246 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 152, 86 |
| Conread position: | 241-483 |
| Cow position: | chr17:23039132-23038876 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 185 |
| Conread position: | 245-448 |
| Cow position: | chr17:14039473-14039690 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 253-484 |
| Cow position: | chr17:4083574-4083326 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 107, 40 |
| Conread position: | 257-482 |
| Cow position: | chr17:9079868-9080111 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 304-482 |
| Cow position: | chr17:2175284-2175106 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 109 |
Show alignments to all cow chromosomes.