Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 231-350 |
| Cow position: | chr21:26401894-26402012 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 231-388 |
| Cow position: | chr21:361536-361381 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 231-448 |
| Cow position: | chr21:44764091-44764318 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 231-456 |
| Cow position: | chr21:26849165-26849399 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 37 |
| Conread position: | 231-470 |
| Cow position: | chr21:468761-468509 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 118, 236 |
| Conread position: | 231-470 |
| Cow position: | chr21:2539215-2539470 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 150, 14 |
| Conread position: | 231-481 |
| Cow position: | chr21:2512713-2512445 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-482 |
| Cow position: | chr21:4588151-4588408 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 85 |
| Conread position: | 231-482 |
| Cow position: | chr21:6414160-6414429 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr21:10568562-10568298 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 150, 81 |
| Conread position: | 231-482 |
| Cow position: | chr21:10851941-10851673 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr21:11507478-11507209 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr21:19612624-19612355 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-482 |
| Cow position: | chr21:28257285-28257025 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 158, 33 |
| Conread position: | 231-482 |
| Cow position: | chr21:33711013-33710744 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 231-482 |
| Cow position: | chr21:37373090-37372830 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 156, 182 |
| Conread position: | 231-482 |
| Cow position: | chr21:38802301-38802032 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 231-483 |
| Cow position: | chr21:2418068-2417807 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 231-483 |
| Cow position: | chr21:2712760-2712512 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 231-483 |
| Cow position: | chr21:6626396-6626123 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 231-483 |
| Cow position: | chr21:9893832-9893567 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 146, 47 |
| Conread position: | 231-483 |
| Cow position: | chr21:26837054-26836781 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 231-484 |
| Cow position: | chr21:2879962-2880228 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 151, 69 |
| Conread position: | 231-484 |
| Cow position: | chr21:5839340-5839593 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 90, 141 |
| Conread position: | 231-484 |
| Cow position: | chr21:20742776-20743035 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 159, 122 |
| Conread position: | 231-484 |
| Cow position: | chr21:27069100-27069367 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 151, 234 |
| Conread position: | 231-484 |
| Cow position: | chr21:30563528-30563267 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 151, 56 |
| Conread position: | 231-484 |
| Cow position: | chr21:30597607-30597875 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 142, 47 |
| Conread position: | 231-484 |
| Cow position: | chr21:33254045-33253776 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr21:40269808-40270079 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 231-484 |
| Cow position: | chr21:47647196-47646928 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 235 |
| Conread position: | 231-484 |
| Cow position: | chr21:47942810-47942542 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 41, 98 |
| Conread position: | 232-446 |
| Cow position: | chr21:7591519-7591305 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 163, 19 |
| Conread position: | 232-483 |
| Cow position: | chr21:147784-147518 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-483 |
| Cow position: | chr21:3780636-3780368 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 232-484 |
| Cow position: | chr21:31514453-31514721 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-484 |
| Cow position: | chr21:34655691-34655429 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 152, 238 |
| Conread position: | 235-388 |
| Cow position: | chr21:27150340-27150187 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-484 |
| Cow position: | chr21:13298451-13298188 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 155, 56 |
| Conread position: | 235-484 |
| Cow position: | chr21:27567603-27567339 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 141, 10 |
| Conread position: | 237-484 |
| Cow position: | chr21:5018998-5018733 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 238-369 |
| Cow position: | chr21:35143834-35143965 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-484 |
| Cow position: | chr21:31250848-31250605 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 41 |
| Conread position: | 247-467 |
| Cow position: | chr21:26648864-26649086 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 252-483 |
| Cow position: | chr21:1286372-1286619 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 130, 210 |
| Conread position: | 271-442 |
| Cow position: | chr21:4712527-4712353 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 280-482 |
| Cow position: | chr21:2672879-2673087 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 71, 123 |
| Conread position: | 297-483 |
| Cow position: | chr21:28614126-28613922 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.