Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 231-335 |
| Cow position: | chr28:18302169-18302276 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 231-388 |
| Cow position: | chr28:10067322-10067481 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 231-388 |
| Cow position: | chr28:15685204-15685047 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-388 |
| Cow position: | chr28:34201915-34202072 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-462 |
| Cow position: | chr28:7058930-7059173 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 142, 201 |
| Conread position: | 231-467 |
| Cow position: | chr28:17381134-17381381 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 231-469 |
| Cow position: | chr28:10645700-10645949 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 142, 69 |
| Conread position: | 231-476 |
| Cow position: | chr28:10495763-10496013 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 156, 179 |
| Conread position: | 231-481 |
| Cow position: | chr28:784395-784132 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 151, 233 |
| Conread position: | 231-482 |
| Cow position: | chr28:483856-484124 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 151, 234 |
| Conread position: | 231-482 |
| Cow position: | chr28:1459833-1459564 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr28:1955093-1954829 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 142, 234 |
| Conread position: | 231-482 |
| Cow position: | chr28:7742171-7741904 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 142, 235 |
| Conread position: | 231-482 |
| Cow position: | chr28:9288685-9288419 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr28:13461706-13461440 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 231-482 |
| Cow position: | chr28:24590594-24590326 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 158, 57 |
| Conread position: | 231-483 |
| Cow position: | chr28:5800030-5799759 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 231-483 |
| Cow position: | chr28:24669335-24669070 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 154, 122 |
| Conread position: | 231-484 |
| Cow position: | chr28:1385670-1385938 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 56, 238 |
| Conread position: | 231-484 |
| Cow position: | chr28:1506604-1506333 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 151, 246 |
| Conread position: | 231-484 |
| Cow position: | chr28:1813196-1813462 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 151, 92 |
| Conread position: | 231-484 |
| Cow position: | chr28:2086203-2085932 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr28:5939226-5938955 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr28:8380775-8380504 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr28:11504503-11504766 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 93, 55 |
| Conread position: | 231-484 |
| Cow position: | chr28:12152064-12151797 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 83, 235 |
| Conread position: | 231-484 |
| Cow position: | chr28:12408489-12408758 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr28:12647953-12648207 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 128 |
| Conread position: | 231-484 |
| Cow position: | chr28:15034374-15034644 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 151, 29 |
| Conread position: | 231-484 |
| Cow position: | chr28:18518709-18518980 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 231-484 |
| Cow position: | chr28:26424523-26424791 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 97, 232 |
| Conread position: | 232-484 |
| Cow position: | chr28:1216100-1216364 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 150, 60 |
| Conread position: | 232-484 |
| Cow position: | chr28:17390140-17389869 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 23, 235 |
| Conread position: | 232-484 |
| Cow position: | chr28:22259417-22259683 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 150, 233 |
| Conread position: | 233-484 |
| Cow position: | chr28:1166157-1166422 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 233-484 |
| Cow position: | chr28:5749967-5750236 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 233-484 |
| Cow position: | chr28:5814945-5814700 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 234, 115 |
| Conread position: | 234-388 |
| Cow position: | chr28:10650793-10650947 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-448 |
| Cow position: | chr28:22231558-22231780 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 153, 18 |
| Conread position: | 234-484 |
| Cow position: | chr28:29821721-29821466 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 148, 202 |
| Conread position: | 234-484 |
| Cow position: | chr28:33638279-33638009 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 235-469 |
| Cow position: | chr28:2117728-2117497 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 164, 181 |
| Conread position: | 235-483 |
| Cow position: | chr28:25761198-25760939 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 137, 79 |
| Conread position: | 235-484 |
| Cow position: | chr28:3190518-3190785 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 235-484 |
| Cow position: | chr28:5766465-5766198 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 120, 240 |
| Conread position: | 235-484 |
| Cow position: | chr28:8719224-8719485 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 147, 16 |
| Conread position: | 235-484 |
| Cow position: | chr28:10580138-10580406 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 93, 261 |
| Conread position: | 236-457 |
| Cow position: | chr28:23023959-23023728 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 236-473 |
| Cow position: | chr28:33254047-33253792 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 237-471 |
| Cow position: | chr28:699007-698762 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 136, 60 |
| Conread position: | 237-483 |
| Cow position: | chr28:14193842-14194083 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 133, 11 |
| Conread position: | 237-484 |
| Cow position: | chr28:7003728-7003465 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 237-484 |
| Cow position: | chr28:21361223-21360964 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 14 |
| Conread position: | 237-484 |
| Cow position: | chr28:21567172-21566925 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 95 |
| Conread position: | 238-470 |
| Cow position: | chr28:7812150-7811898 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 240 |
| Conread position: | 252-374 |
| Cow position: | chr28:25705889-25706013 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 262-471 |
| Cow position: | chr28:18146041-18146258 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 16 |
| Conread position: | 293-466 |
| Cow position: | chr28:6786925-6786742 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 86, 34 |
Show alignments to all cow chromosomes.