Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 231-380 |
| Cow position: | chr29:45206232-45206084 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 231-388 |
| Cow position: | chr29:9082185-9082340 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-393 |
| Cow position: | chr29:10645709-10645870 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 231-416 |
| Cow position: | chr29:21421995-21422181 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 231-444 |
| Cow position: | chr29:27812785-27812566 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 114, 66 |
| Conread position: | 231-466 |
| Cow position: | chr29:2691864-2691614 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 231-466 |
| Cow position: | chr29:36634681-36634931 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 142, 180 |
| Conread position: | 231-471 |
| Cow position: | chr29:647509-647261 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 7, 70 |
| Conread position: | 231-477 |
| Cow position: | chr29:40501305-40501565 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 151, 234 |
| Conread position: | 231-480 |
| Cow position: | chr29:13583783-13583516 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-480 |
| Cow position: | chr29:16172406-16172664 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 151, 11 |
| Conread position: | 231-482 |
| Cow position: | chr29:608946-609215 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 231-482 |
| Cow position: | chr29:7846092-7845823 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 231-482 |
| Cow position: | chr29:10022630-10022899 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr29:13018392-13018131 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 151, 83 |
| Conread position: | 231-482 |
| Cow position: | chr29:19526584-19526853 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 231-482 |
| Cow position: | chr29:21431150-21431419 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr29:27180051-27180320 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr29:31183104-31182841 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 144, 201 |
| Conread position: | 231-482 |
| Cow position: | chr29:32558049-32558318 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr29:35298612-35298343 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr29:409560-409817 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 154, 39 |
| Conread position: | 231-484 |
| Cow position: | chr29:2746761-2747028 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 231-484 |
| Cow position: | chr29:5981010-5981277 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 231-484 |
| Cow position: | chr29:6264298-6264569 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 231-484 |
| Cow position: | chr29:7429418-7429693 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-484 |
| Cow position: | chr29:9641083-9641355 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 231-484 |
| Cow position: | chr29:14209850-14210117 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 151, 234 |
| Conread position: | 231-484 |
| Cow position: | chr29:23977825-23977554 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 231-484 |
| Cow position: | chr29:26163131-26163403 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr29:32287948-32287681 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 140, 122 |
| Conread position: | 231-484 |
| Cow position: | chr29:32541796-32541528 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 151, 229 |
| Conread position: | 231-484 |
| Cow position: | chr29:43325218-43324950 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr29:45461448-45461178 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-446 |
| Cow position: | chr29:2465175-2465405 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 232-482 |
| Cow position: | chr29:2101540-2101272 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-484 |
| Cow position: | chr29:46760-47024 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 126, 231 |
| Conread position: | 232-484 |
| Cow position: | chr29:16024264-16023995 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 150, 264 |
| Conread position: | 232-484 |
| Cow position: | chr29:16345913-16345644 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 150, 223 |
| Conread position: | 233-484 |
| Cow position: | chr29:39078011-39078280 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 234-475 |
| Cow position: | chr29:20252864-20252609 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 139, 231 |
| Conread position: | 235-378 |
| Cow position: | chr29:17406822-17406680 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 237-449 |
| Cow position: | chr29:45625083-45624860 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 237-468 |
| Cow position: | chr29:2948684-2948926 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 153, 210 |
| Conread position: | 237-468 |
| Cow position: | chr29:32892467-32892234 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 139, 27 |
| Conread position: | 237-470 |
| Cow position: | chr29:25930825-25931074 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 237-481 |
| Cow position: | chr29:14587615-14587353 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 237-482 |
| Cow position: | chr29:19621576-19621844 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 237-483 |
| Cow position: | chr29:5236717-5236453 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 242-379 |
| Cow position: | chr29:32641630-32641496 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 242-484 |
| Cow position: | chr29:19954310-19954057 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 135, 5 |
| Conread position: | 243-465 |
| Cow position: | chr29:8665195-8664957 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 253-484 |
| Cow position: | chr29:14113222-14112978 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 114, 235 |
| Conread position: | 259-484 |
| Cow position: | chr29:15996978-15997220 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 262-484 |
| Cow position: | chr29:14084459-14084697 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 111, 212 |
| Conread position: | 266-483 |
| Cow position: | chr29:27262045-27262284 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 13 |
Show alignments to all cow chromosomes.