Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 197-388 |
| Cow position: | chr5:3254049-3254241 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 40 |
| Conread position: | 228-380 |
| Cow position: | chr5:54860448-54860599 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 230-484 |
| Cow position: | chr5:23230505-23230241 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 143, 239 |
| Conread position: | 231-375 |
| Cow position: | chr5:14657928-14658071 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 231-381 |
| Cow position: | chr5:46646500-46646349 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 231-388 |
| Cow position: | chr5:20108425-20108268 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-448 |
| Cow position: | chr5:37378650-37378417 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-470 |
| Cow position: | chr5:3787461-3787204 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 231-471 |
| Cow position: | chr5:40758444-40758195 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 231-477 |
| Cow position: | chr5:46004353-46004609 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 153, 37 |
| Conread position: | 231-477 |
| Cow position: | chr5:51744799-51744544 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 151, 179 |
| Conread position: | 231-482 |
| Cow position: | chr5:306890-307158 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 231-482 |
| Cow position: | chr5:987544-987813 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr5:4017690-4017943 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 231-482 |
| Cow position: | chr5:4684281-4684549 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 231-482 |
| Cow position: | chr5:4756659-4756928 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 152, 234 |
| Conread position: | 231-482 |
| Cow position: | chr5:5104739-5104477 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 145, 185 |
| Conread position: | 231-482 |
| Cow position: | chr5:6153374-6153644 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr5:10813226-10813495 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr5:12731191-12731459 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 141, 224 |
| Conread position: | 231-482 |
| Cow position: | chr5:18665289-18665030 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 52 |
| Conread position: | 231-482 |
| Cow position: | chr5:23958806-23959075 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr5:26077669-26077937 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 231-482 |
| Cow position: | chr5:26184383-26184116 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 153, 14 |
| Conread position: | 231-482 |
| Cow position: | chr5:31708087-31707818 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr5:32774289-32774020 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 142, 234 |
| Conread position: | 231-482 |
| Cow position: | chr5:35301622-35301353 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 231-482 |
| Cow position: | chr5:41376330-41376599 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-482 |
| Cow position: | chr5:50871131-50870873 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 140, 193 |
| Conread position: | 231-482 |
| Cow position: | chr5:59062160-59061893 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-483 |
| Cow position: | chr5:13047162-13046911 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 166, 11 |
| Conread position: | 231-483 |
| Cow position: | chr5:40131078-40131348 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-484 |
| Cow position: | chr5:4070740-4070474 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 145, 244 |
| Conread position: | 231-484 |
| Cow position: | chr5:10855294-10855564 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 151, 104 |
| Conread position: | 231-484 |
| Cow position: | chr5:10920359-10920092 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 231-484 |
| Cow position: | chr5:24100173-24099910 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr5:30580859-30580597 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 109, 92 |
| Conread position: | 231-484 |
| Cow position: | chr5:31099912-31100175 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 7, 200 |
| Conread position: | 231-484 |
| Cow position: | chr5:40923151-40923393 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 114, 54 |
| Conread position: | 231-484 |
| Cow position: | chr5:41960233-41960493 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 154, 66 |
| Conread position: | 231-484 |
| Cow position: | chr5:55629507-55629247 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 151, 89 |
| Conread position: | 231-484 |
| Cow position: | chr5:57481015-57481287 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-484 |
| Cow position: | chr5:64780490-64780762 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 232-385 |
| Cow position: | chr5:34698173-34698020 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-448 |
| Cow position: | chr5:2915957-2915725 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-465 |
| Cow position: | chr5:57816170-57816419 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 232-484 |
| Cow position: | chr5:3502584-3502855 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 232-484 |
| Cow position: | chr5:23830798-23831068 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 141, 91 |
| Conread position: | 232-484 |
| Cow position: | chr5:24296133-24295868 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 232-484 |
| Cow position: | chr5:59283839-59283569 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 233-442 |
| Cow position: | chr5:46808825-46808600 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 233-482 |
| Cow position: | chr5:27198131-27197864 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 233-484 |
| Cow position: | chr5:54620567-54620302 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 117 |
| Conread position: | 234-367 |
| Cow position: | chr5:58191241-58191374 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-390 |
| Cow position: | chr5:12641914-12642070 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-481 |
| Cow position: | chr5:76096573-76096310 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 234-482 |
| Cow position: | chr5:10841861-10842126 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 148, 18 |
| Conread position: | 234-482 |
| Cow position: | chr5:47829556-47829822 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 234-484 |
| Cow position: | chr5:7275352-7275093 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 143, 58 |
| Conread position: | 234-484 |
| Cow position: | chr5:46737073-46737336 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 234-484 |
| Cow position: | chr5:48807212-48807480 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 235-455 |
| Cow position: | chr5:29434243-29434470 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 125, 58 |
| Conread position: | 235-464 |
| Cow position: | chr5:31122067-31122312 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 235-471 |
| Cow position: | chr5:46627878-46628112 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 141, 92 |
| Conread position: | 235-483 |
| Cow position: | chr5:41527278-41527543 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 237-388 |
| Cow position: | chr5:12681533-12681684 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-465 |
| Cow position: | chr5:73487549-73487793 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 237-483 |
| Cow position: | chr5:52435254-52434994 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 237-484 |
| Cow position: | chr5:53946346-53946085 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 44 |
| Conread position: | 239-484 |
| Cow position: | chr5:28242532-28242285 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 122, 113 |
| Conread position: | 239-484 |
| Cow position: | chr5:37733865-37733602 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 240-482 |
| Cow position: | chr5:2459497-2459238 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 144, 86 |
| Conread position: | 242-484 |
| Cow position: | chr5:1340533-1340777 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 131, 183 |
| Conread position: | 244-484 |
| Cow position: | chr5:18274263-18274012 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 250-484 |
| Cow position: | chr5:45701814-45701566 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 125, 226 |
| Conread position: | 251-484 |
| Cow position: | chr5:24152272-24152022 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 252-484 |
| Cow position: | chr5:18559902-18560153 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 257-463 |
| Cow position: | chr5:2975288-2975066 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 257-482 |
| Cow position: | chr5:46777891-46777648 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 260-484 |
| Cow position: | chr5:28014524-28014289 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 265-484 |
| Cow position: | chr5:29767605-29767376 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 266-482 |
| Cow position: | chr5:4386715-4386492 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 9, 13 |
| Conread position: | 271-465 |
| Cow position: | chr5:7227332-7227134 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 371-482 |
| Cow position: | chr5:57000692-57000579 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.