Cow genome map
| Conread name: | rmas920b_n5.y1 | 
| Conread position: | 191-471 | 
| Cow position: | chr6:11870953-11871248 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 65, 74 | 
| Conread position: | 230-470 | 
| Cow position: | chr6:28170571-28170317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 92, 189 | 
| Conread position: | 231-359 | 
| Cow position: | chr6:50111480-50111352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 112, 125 | 
| Conread position: | 231-380 | 
| Cow position: | chr6:17048002-17047853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 231-383 | 
| Cow position: | chr6:26777508-26777657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 231-388 | 
| Cow position: | chr6:14390590-14390433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 231-455 | 
| Cow position: | chr6:57471329-57471089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-456 | 
| Cow position: | chr6:18972802-18973039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 143, 0 | 
| Conread position: | 231-456 | 
| Cow position: | chr6:35418644-35418885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-465 | 
| Cow position: | chr6:12664659-12664909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-470 | 
| Cow position: | chr6:58028388-58028134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 7, 234 | 
| Conread position: | 231-470 | 
| Cow position: | chr6:59594564-59594333 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 231-471 | 
| Cow position: | chr6:59617752-59617503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 145, 82 | 
| Conread position: | 231-479 | 
| Cow position: | chr6:38273230-38272965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 154, 0 | 
| Conread position: | 231-480 | 
| Cow position: | chr6:66233461-66233201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-481 | 
| Cow position: | chr6:1534919-1535178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 151, 62 | 
| Conread position: | 231-481 | 
| Cow position: | chr6:3150897-3150628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 70, 245 | 
| Conread position: | 231-481 | 
| Cow position: | chr6:13309717-13309985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 151, 234 | 
| Conread position: | 231-481 | 
| Cow position: | chr6:43791907-43792175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 100, 92 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:1409721-1409990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 145, 16 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:5749586-5749317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:7139679-7139948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 9e-31 | 
| Alignm gaps (pig, cow): | 150, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:26669201-26669469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 151, 128 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:27171242-27170973 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:28187177-28187427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 184, 62 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:28489908-28490174 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 153, 54 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:28703048-28703317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:39910993-39910731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 121, 231 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:40276744-40276476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:40327080-40326811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:40378970-40379238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 142, 16 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:43619385-43619116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:44002333-44002066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 149, 232 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:44148887-44149155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:45587609-45587344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:50636532-50636262 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 123, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:52694687-52694420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 151, 47 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:65820309-65820577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 231-482 | 
| Cow position: | chr6:65907126-65907395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 11, 110 | 
| Conread position: | 231-483 | 
| Cow position: | chr6:36528859-36528604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 188, 0 | 
| Conread position: | 231-483 | 
| Cow position: | chr6:38206946-38206697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 15, 73 | 
| Conread position: | 231-483 | 
| Cow position: | chr6:58460660-58460927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 153, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:49944-50213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:183881-184152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 127, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:477201-476929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:703873-703604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:3887856-3888122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 7e-40 | 
| Alignm gaps (pig, cow): | 145, 106 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:5948118-5948391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:10249946-10250214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 241 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:10338980-10339245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 39, 49 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:11723537-11723802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 151, 234 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:12627360-12627093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 97, 240 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:15139512-15139783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:24241066-24240798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 9.00054e-42 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:25792096-25792366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 145, 14 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:27528358-27528625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 127, 69 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:30273232-30273503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 126, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:35875049-35875318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 150, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:40552920-40553191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 146, 47 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:40865665-40865930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 151, 47 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:41229105-41228836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 151, 220 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:44261818-44262083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 145, 205 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:51716194-51715923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 151, 234 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:51731742-51731475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 133, 230 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:65843277-65843006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 127, 0 | 
| Conread position: | 231-484 | 
| Cow position: | chr6:66745654-66745383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 232-482 | 
| Cow position: | chr6:28104204-28104471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 141, 20 | 
| Conread position: | 232-484 | 
| Cow position: | chr6:915291-915026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 34, 57 | 
| Conread position: | 232-484 | 
| Cow position: | chr6:3486764-3487032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 9e-31 | 
| Alignm gaps (pig, cow): | 150, 111 | 
| Conread position: | 232-484 | 
| Cow position: | chr6:8203850-8203579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 150, 0 | 
| Conread position: | 232-484 | 
| Cow position: | chr6:16591617-16591362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 132, 217 | 
| Conread position: | 232-484 | 
| Cow position: | chr6:34890466-34890732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 126, 0 | 
| Conread position: | 232-484 | 
| Cow position: | chr6:39333211-39333483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 233-402 | 
| Cow position: | chr6:11269787-11269958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 129, 19 | 
| Conread position: | 233-454 | 
| Cow position: | chr6:1098390-1098605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 140, 114 | 
| Conread position: | 233-471 | 
| Cow position: | chr6:47625721-47625469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 149, 213 | 
| Conread position: | 233-484 | 
| Cow position: | chr6:10645379-10645111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 144, 248 | 
| Conread position: | 234-476 | 
| Cow position: | chr6:64717978-64717719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 235-482 | 
| Cow position: | chr6:2877026-2877291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 9e-31 | 
| Alignm gaps (pig, cow): | 124, 0 | 
| Conread position: | 235-482 | 
| Cow position: | chr6:47047523-47047788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 138, 0 | 
| Conread position: | 235-484 | 
| Cow position: | chr6:3572252-3571985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 150, 0 | 
| Conread position: | 235-484 | 
| Cow position: | chr6:25215875-25215608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 141, 0 | 
| Conread position: | 236-475 | 
| Cow position: | chr6:48579377-48579623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 138, 96 | 
| Conread position: | 237-385 | 
| Cow position: | chr6:3275488-3275636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 237-475 | 
| Cow position: | chr6:40317248-40316998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 69, 63 | 
| Conread position: | 237-483 | 
| Cow position: | chr6:47041554-47041816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 145, 0 | 
| Conread position: | 237-484 | 
| Cow position: | chr6:8759642-8759905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 145, 0 | 
| Conread position: | 238-483 | 
| Cow position: | chr6:58602133-58601873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 6e-38 | 
| Alignm gaps (pig, cow): | 149, 10 | 
| Conread position: | 239-480 | 
| Cow position: | chr6:6158362-6158113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 138, 41 | 
| Conread position: | 245-484 | 
| Cow position: | chr6:55541608-55541865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 139, 0 | 
| Conread position: | 251-475 | 
| Cow position: | chr6:2577603-2577380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 127, 95 | 
| Conread position: | 252-482 | 
| Cow position: | chr6:21835556-21835791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 133, 188 | 
| Conread position: | 252-484 | 
| Cow position: | chr6:10680057-10679813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 121, 213 | 
| Conread position: | 271-482 | 
| Cow position: | chr6:16053731-16053502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 113, 55 | 
| Conread position: | 271-482 | 
| Cow position: | chr6:20559489-20559712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 105, 74 | 
Show alignments to all cow chromosomes.
