Cow genome map
| Conread name: | rmas920b_n5.y1 |
| Conread position: | 230-483 |
| Cow position: | chr9:827517-827784 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 188 |
| Conread position: | 230-484 |
| Cow position: | chr9:25188682-25188421 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 231-367 |
| Cow position: | chr9:47004322-47004186 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-368 |
| Cow position: | chr9:2000558-2000695 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-383 |
| Cow position: | chr9:30300638-30300790 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-385 |
| Cow position: | chr9:26082969-26083123 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-388 |
| Cow position: | chr9:56302861-56303018 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-391 |
| Cow position: | chr9:29026334-29026492 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 231-401 |
| Cow position: | chr9:3804940-3804773 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 154, 77 |
| Conread position: | 231-401 |
| Cow position: | chr9:43665258-43665087 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-448 |
| Cow position: | chr9:2211357-2211137 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 147, 66 |
| Conread position: | 231-454 |
| Cow position: | chr9:28001115-28000873 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 231-471 |
| Cow position: | chr9:47043551-47043296 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 128, 244 |
| Conread position: | 231-473 |
| Cow position: | chr9:50698884-50698636 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 231-478 |
| Cow position: | chr9:51180589-51180853 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-481 |
| Cow position: | chr9:650434-650705 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 145, 197 |
| Conread position: | 231-481 |
| Cow position: | chr9:25033970-25034238 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr9:779231-779497 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 153, 69 |
| Conread position: | 231-482 |
| Cow position: | chr9:1250407-1250675 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 231-482 |
| Cow position: | chr9:3310205-3309938 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 142, 234 |
| Conread position: | 231-482 |
| Cow position: | chr9:8781337-8781587 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 188, 124 |
| Conread position: | 231-482 |
| Cow position: | chr9:25904112-25903847 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 61 |
| Conread position: | 231-482 |
| Cow position: | chr9:27935971-27935702 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 231-482 |
| Cow position: | chr9:31066309-31066040 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 156, 244 |
| Conread position: | 231-482 |
| Cow position: | chr9:37969618-37969887 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr9:38677735-38677469 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 151, 234 |
| Conread position: | 231-482 |
| Cow position: | chr9:44384854-44384585 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr9:50093646-50093915 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 231-482 |
| Cow position: | chr9:50792306-50792035 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 231-482 |
| Cow position: | chr9:64015081-64015348 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 231-483 |
| Cow position: | chr9:4534084-4533815 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 231-483 |
| Cow position: | chr9:10976706-10976438 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 142, 244 |
| Conread position: | 231-483 |
| Cow position: | chr9:26568186-26567923 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 153, 57 |
| Conread position: | 231-484 |
| Cow position: | chr9:4283550-4283300 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 231-484 |
| Cow position: | chr9:5005576-5005305 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 231-484 |
| Cow position: | chr9:6250875-6250621 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 156 |
| Conread position: | 231-484 |
| Cow position: | chr9:9014661-9014395 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 151, 96 |
| Conread position: | 231-484 |
| Cow position: | chr9:17304385-17304655 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 151, 114 |
| Conread position: | 231-484 |
| Cow position: | chr9:19157941-19158213 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 231-484 |
| Cow position: | chr9:27783776-27783507 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 146, 225 |
| Conread position: | 231-484 |
| Cow position: | chr9:31809166-31808904 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 133, 229 |
| Conread position: | 231-484 |
| Cow position: | chr9:37161223-37161490 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 151, 234 |
| Conread position: | 231-484 |
| Cow position: | chr9:44819727-44819462 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 159, 104 |
| Conread position: | 231-484 |
| Cow position: | chr9:54926126-54925859 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 129, 112 |
| Conread position: | 232-446 |
| Cow position: | chr9:17900987-17901214 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 150, 20 |
| Conread position: | 232-470 |
| Cow position: | chr9:21410895-21410641 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 232-484 |
| Cow position: | chr9:1994817-1995066 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 235, 155 |
| Conread position: | 232-484 |
| Cow position: | chr9:27036490-27036222 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 233-380 |
| Cow position: | chr9:59509572-59509719 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 233-446 |
| Cow position: | chr9:54681158-54681372 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 153, 135 |
| Conread position: | 233-484 |
| Cow position: | chr9:28023389-28023120 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 234-483 |
| Cow position: | chr9:30673967-30673701 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 148, 230 |
| Conread position: | 235-385 |
| Cow position: | chr9:6709545-6709395 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-482 |
| Cow position: | chr9:30828328-30828063 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 235-482 |
| Cow position: | chr9:45875104-45874839 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 235-484 |
| Cow position: | chr9:20939897-20939631 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 147, 61 |
| Conread position: | 237-404 |
| Cow position: | chr9:3935872-3936043 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 138, 164 |
| Conread position: | 237-466 |
| Cow position: | chr9:28679550-28679305 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 237-482 |
| Cow position: | chr9:12913362-12913100 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 237-483 |
| Cow position: | chr9:42311263-42310999 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 238-483 |
| Cow position: | chr9:7004317-7004052 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 239-484 |
| Cow position: | chr9:22436535-22436287 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 156, 68 |
| Conread position: | 239-484 |
| Cow position: | chr9:26101697-26101941 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 132, 52 |
| Conread position: | 242-471 |
| Cow position: | chr9:59428580-59428342 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 131, 229 |
| Conread position: | 244-479 |
| Cow position: | chr9:12182852-12183100 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 247-482 |
| Cow position: | chr9:1074601-1074854 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 252-442 |
| Cow position: | chr9:29789118-29789312 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 138, 158 |
| Conread position: | 252-482 |
| Cow position: | chr9:17062814-17063062 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 130, 210 |
| Conread position: | 254-483 |
| Cow position: | chr9:10938161-10937916 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.