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Cow genome map

           
Conread name:
           
rmed12c_c19.y1
        

               
Conread position:
               
137-444
               

               
Cow position:
               
chr1:70416395-70416708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
202-449
               

               
Cow position:
               
chr1:29474069-29474300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
211-447
               

               
Cow position:
               
chr1:46245457-46245691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 97
               

               
Conread position:
               
221-446
               

               
Cow position:
               
chr1:24132796-24133013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
193, 14
               

               
Conread position:
               
225-447
               

               
Cow position:
               
chr1:102768442-102768226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
233-447
               

               
Cow position:
               
chr1:81471614-81471404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
234-447
               

               
Cow position:
               
chr1:9637287-9637078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
237-449
               

               
Cow position:
               
chr1:96964569-96964363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr1:88397595-88397796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
173, 23
               

               
Conread position:
               
243-447
               

               
Cow position:
               
chr1:72034677-72034875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
245-449
               

               
Cow position:
               
chr1:91651100-91651304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
249-445
               

               
Cow position:
               
chr1:89146635-89146824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
165, 8
               

               
Conread position:
               
250-443
               

               
Cow position:
               
chr1:90192662-90192469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
250-449
               

               
Cow position:
               
chr1:64887267-64887464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
252-445
               

               
Cow position:
               
chr1:75411592-75411788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
254-449
               

               
Cow position:
               
chr1:102424029-102423840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
156, 35
               

               
Conread position:
               
255-447
               

               
Cow position:
               
chr1:648566-648374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
158, 34
               

               
Conread position:
               
255-447
               

               
Cow position:
               
chr1:46031202-46031009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
255-447
               

               
Cow position:
               
chr1:78782220-78782024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 52
               

               
Conread position:
               
255-447
               

               
Cow position:
               
chr1:95809789-95809600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
255-449
               

               
Cow position:
               
chr1:33720347-33720148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
256-449
               

               
Cow position:
               
chr1:13157425-13157238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 18
               

               
Conread position:
               
257-413
               

               
Cow position:
               
chr1:36089981-36090131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
257-439
               

               
Cow position:
               
chr1:39095723-39095545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
157, 37
               

               
Conread position:
               
257-443
               

               
Cow position:
               
chr1:30862181-30862363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
257-446
               

               
Cow position:
               
chr1:50930748-50930929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 50
               

               
Conread position:
               
257-449
               

               
Cow position:
               
chr1:52451003-52450818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
257-460
               

               
Cow position:
               
chr1:11488918-11489122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
63, 6
               

               
Conread position:
               
258-447
               

               
Cow position:
               
chr1:6590270-6590082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
258-447
               

               
Cow position:
               
chr1:40303779-40303600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 32
               

               
Conread position:
               
258-449
               

               
Cow position:
               
chr1:54569931-54569745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
155, 31
               

               
Conread position:
               
261-447
               

               
Cow position:
               
chr1:18936607-18936788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
261-447
               

               
Cow position:
               
chr1:26895585-26895762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
152, 32
               

               
Conread position:
               
261-448
               

               
Cow position:
               
chr1:63994327-63994507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
153, 46
               

               
Conread position:
               
261-448
               

               
Cow position:
               
chr1:74083958-74084143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
261-449
               

               
Cow position:
               
chr1:1802408-1802214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
261-460
               

               
Cow position:
               
chr1:30983260-30983460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
261-460
               

               
Cow position:
               
chr1:31794770-31794972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 191
               

               
Conread position:
               
262-434
               

               
Cow position:
               
chr1:44814441-44814608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
262-446
               

               
Cow position:
               
chr1:21508624-21508443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
262-447
               

               
Cow position:
               
chr1:52435503-52435321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
262-460
               

               
Cow position:
               
chr1:34771276-34771466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
263-447
               

               
Cow position:
               
chr1:65103854-65103669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
263-447
               

               
Cow position:
               
chr1:71664668-71664848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
150, 44
               

               
Conread position:
               
263-449
               

               
Cow position:
               
chr1:4444612-4444795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
263-449
               

               
Cow position:
               
chr1:21561250-21561059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
263-456
               

               
Cow position:
               
chr1:628193-628007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
151, 12
               

               
Conread position:
               
263-460
               

               
Cow position:
               
chr1:22943798-22943991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
264-443
               

               
Cow position:
               
chr1:55260010-55260183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
264-445
               

               
Cow position:
               
chr1:4582777-4582601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
264-449
               

               
Cow position:
               
chr1:70344276-70344087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
265-444
               

               
Cow position:
               
chr1:71119746-71119573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 43
               

               
Conread position:
               
265-446
               

               
Cow position:
               
chr1:42175952-42175777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
149, 40
               

               
Conread position:
               
265-446
               

               
Cow position:
               
chr1:68730232-68730050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
265-447
               

               
Cow position:
               
chr1:54156509-54156686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
265-447
               

               
Cow position:
               
chr1:69346747-69346930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
265-447
               

               
Cow position:
               
chr1:72422182-72422359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
149, 42
               

               
Conread position:
               
265-447
               

               
Cow position:
               
chr1:73020438-73020613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
265-447
               

               
Cow position:
               
chr1:76735255-76735432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 42
               

               
Conread position:
               
265-449
               

               
Cow position:
               
chr1:5010610-5010789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
149, 7
               

               
Conread position:
               
265-449
               

               
Cow position:
               
chr1:5284001-5284185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
265-449
               

               
Cow position:
               
chr1:6102674-6102856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
265-449
               

               
Cow position:
               
chr1:10155847-10156028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
266-440
               

               
Cow position:
               
chr1:3535294-3535126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
266-445
               

               
Cow position:
               
chr1:72105624-72105457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
266-449
               

               
Cow position:
               
chr1:81515462-81515280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 40
               

               
Conread position:
               
266-459
               

               
Cow position:
               
chr1:30470007-30469817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
266-464
               

               
Cow position:
               
chr1:3130324-3130514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
267-413
               

               
Cow position:
               
chr1:36306909-36306760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
267-436
               

               
Cow position:
               
chr1:65160353-65160188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
267-437
               

               
Cow position:
               
chr1:31212358-31212193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
267-439
               

               
Cow position:
               
chr1:7443204-7443033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr1:1495342-1495164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
147, 22
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr1:16060786-16060955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 40
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr1:36018557-36018734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr1:46693429-46693605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
119, 38
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr1:98556896-98557070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
147, 43
               

               
Conread position:
               
267-448
               

               
Cow position:
               
chr1:37726191-37726372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
267-448
               

               
Cow position:
               
chr1:56109378-56109557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
267-449
               

               
Cow position:
               
chr1:38419248-38419070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
107, 40
               

               
Conread position:
               
267-449
               

               
Cow position:
               
chr1:63434570-63434759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
267-455
               

               
Cow position:
               
chr1:100823262-100823079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
147, 40
               

               
Conread position:
               
267-456
               

               
Cow position:
               
chr1:95704031-95703846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 6
               

               
Conread position:
               
267-460
               

               
Cow position:
               
chr1:50854136-50853943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
268-444
               

               
Cow position:
               
chr1:30028011-30028180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
268-445
               

               
Cow position:
               
chr1:7748438-7748264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
268-446
               

               
Cow position:
               
chr1:59519132-59518965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
268-447
               

               
Cow position:
               
chr1:1878247-1878069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
269-446
               

               
Cow position:
               
chr1:75250337-75250160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
143, 45
               

               
Conread position:
               
269-447
               

               
Cow position:
               
chr1:5751536-5751362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 39
               

               
Conread position:
               
270-445
               

               
Cow position:
               
chr1:76222498-76222670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
143, 27
               

               
Conread position:
               
270-445
               

               
Cow position:
               
chr1:87094992-87095163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
143, 37
               

               
Conread position:
               
271-446
               

               
Cow position:
               
chr1:8838-8665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
271-446
               

               
Cow position:
               
chr1:79169928-79170103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
271-447
               

               
Cow position:
               
chr1:25956120-25955944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
272-434
               

               
Cow position:
               
chr1:45573641-45573476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 112
               

               
Conread position:
               
272-442
               

               
Cow position:
               
chr1:25735085-25734921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
272-443
               

               
Cow position:
               
chr1:47790444-47790609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
272-444
               

               
Cow position:
               
chr1:91065940-91066099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
142, 33
               

               
Conread position:
               
272-446
               

               
Cow position:
               
chr1:70483118-70483284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
116, 35
               

               
Conread position:
               
272-446
               

               
Cow position:
               
chr1:71078740-71078910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
272-448
               

               
Cow position:
               
chr1:71789926-71790100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
272-449
               

               
Cow position:
               
chr1:98415815-98415634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 42
               

               
Conread position:
               
274-440
               

               
Cow position:
               
chr1:6790989-6790827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
274-446
               

               
Cow position:
               
chr1:3324089-3323918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
274-447
               

               
Cow position:
               
chr1:709673-709851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 152
               

               
Conread position:
               
274-447
               

               
Cow position:
               
chr1:23186586-23186749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
274-447
               

               
Cow position:
               
chr1:47658563-47658394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
274-447
               

               
Cow position:
               
chr1:60603355-60603528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
274-449
               

               
Cow position:
               
chr1:96478038-96477861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
274-456
               

               
Cow position:
               
chr1:3244435-3244252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
275-406
               

               
Cow position:
               
chr1:101867869-101867738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
275-409
               

               
Cow position:
               
chr1:20217371-20217505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 38
               

               
Conread position:
               
275-419
               

               
Cow position:
               
chr1:8778123-8778258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
275-430
               

               
Cow position:
               
chr1:67160074-67160224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
275-442
               

               
Cow position:
               
chr1:63461092-63460932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
139, 30
               

               
Conread position:
               
275-443
               

               
Cow position:
               
chr1:91649195-91649365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
275-444
               

               
Cow position:
               
chr1:6394771-6394609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
275-445
               

               
Cow position:
               
chr1:6731393-6731231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
275-445
               

               
Cow position:
               
chr1:7752594-7752430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
275-445
               

               
Cow position:
               
chr1:15875874-15875711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
275-445
               

               
Cow position:
               
chr1:97232185-97232011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
275-446
               

               
Cow position:
               
chr1:42482414-42482252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
275-446
               

               
Cow position:
               
chr1:48618033-48618194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
275-446
               

               
Cow position:
               
chr1:55230187-55230026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:3685809-3685643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:20667536-20667693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:33206659-33206831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:38706639-38706805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:39683928-39684095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:53370309-53370132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:53403005-53402830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:55296948-55297122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 36
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:56913318-56913480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:63595831-63596005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:77739938-77739771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 32
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr1:98897470-98897645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
275-448
               

               
Cow position:
               
chr1:17056204-17056039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr1:6874029-6873858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr1:12222390-12222560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr1:45579417-45579598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr1:65030284-65030114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr1:66898275-66898451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr1:74751414-74751584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr1:76037298-76037469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
275-450
               

               
Cow position:
               
chr1:48301234-48301404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
275-460
               

               
Cow position:
               
chr1:50585662-50585841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 31
               

               
Conread position:
               
275-460
               

               
Cow position:
               
chr1:73545694-73545874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
134, 32
               

               
Conread position:
               
275-460
               

               
Cow position:
               
chr1:84787474-84787307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
275-463
               

               
Cow position:
               
chr1:95828921-95829100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 32
               

               
Conread position:
               
276-426
               

               
Cow position:
               
chr1:43340420-43340564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
276-440
               

               
Cow position:
               
chr1:83222202-83222040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
276-442
               

               
Cow position:
               
chr1:3271362-3271199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
276-445
               

               
Cow position:
               
chr1:36237993-36237832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
276-445
               

               
Cow position:
               
chr1:96304751-96304918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
276-446
               

               
Cow position:
               
chr1:22824122-22823955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
276-446
               

               
Cow position:
               
chr1:43352439-43352606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
276-446
               

               
Cow position:
               
chr1:92996672-92996841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr1:22231865-22231697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr1:25021865-25022026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr1:46939663-46939836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr1:72068614-72068786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
129, 19
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr1:84782535-84782702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
276-449
               

               
Cow position:
               
chr1:85622745-85622576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
276-456
               

               
Cow position:
               
chr1:47966807-47966982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
133, 31
               

               
Conread position:
               
276-456
               

               
Cow position:
               
chr1:53441902-53442071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
276-456
               

               
Cow position:
               
chr1:99637038-99637213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
277-442
               

               
Cow position:
               
chr1:87072907-87072750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-443
               

               
Cow position:
               
chr1:74304866-74305029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-445
               

               
Cow position:
               
chr1:55428740-55428905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-446
               

               
Cow position:
               
chr1:4294557-4294394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
136, 33
               

               
Conread position:
               
277-446
               

               
Cow position:
               
chr1:81481170-81481332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
137, 19
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:852386-852219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:1347421-1347586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:1380214-1380046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:4573937-4573772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:20537415-20537254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:36625730-36625564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:69250644-69250483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
87, 30
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:69442302-69442469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:75227113-75227271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:79178844-79178677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:82336884-82336727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:92188171-92188006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
132, 30
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:100753744-100753574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 35
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr1:101883178-101883345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr1:14759134-14759308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr1:34731266-34731091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr1:43855501-43855342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr1:84103845-84104014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr1:88926161-88926335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
277-450
               

               
Cow position:
               
chr1:22730945-22730780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 40
               

               
Conread position:
               
277-452
               

               
Cow position:
               
chr1:31801707-31801875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-453
               

               
Cow position:
               
chr1:79631322-79631494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
277-453
               

               
Cow position:
               
chr1:95835582-95835754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-456
               

               
Cow position:
               
chr1:1496305-1496491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 179
               

               
Conread position:
               
277-456
               

               
Cow position:
               
chr1:67585763-67585601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
277-456
               

               
Cow position:
               
chr1:89437515-89437677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
277-460
               

               
Cow position:
               
chr1:7740155-7739985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
137, 38
               

               
Conread position:
               
277-460
               

               
Cow position:
               
chr1:100800557-100800732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
141, 30
               

               
Conread position:
               
277-463
               

               
Cow position:
               
chr1:59551651-59551472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
278-426
               

               
Cow position:
               
chr1:34767505-34767357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
278-438
               

               
Cow position:
               
chr1:73374886-73375044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
278-439
               

               
Cow position:
               
chr1:4391056-4391214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
278-444
               

               
Cow position:
               
chr1:3923593-3923748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 29
               

               
Conread position:
               
278-446
               

               
Cow position:
               
chr1:95153086-95152921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr1:15334100-15333940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr1:23050647-23050481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr1:28563350-28563520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
278-448
               

               
Cow position:
               
chr1:89872179-89872014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
278-451
               

               
Cow position:
               
chr1:100152499-100152323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
278-460
               

               
Cow position:
               
chr1:6398292-6398483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
279-412
               

               
Cow position:
               
chr1:14067233-14067358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
279-436
               

               
Cow position:
               
chr1:29643953-29644104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
134, 18
               

               
Conread position:
               
279-446
               

               
Cow position:
               
chr1:3815471-3815635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
279-446
               

               
Cow position:
               
chr1:41027282-41027124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
279-446
               

               
Cow position:
               
chr1:71945871-71946034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
279-446
               

               
Cow position:
               
chr1:73721574-73721410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
126, 28
               

               
Conread position:
               
279-446
               

               
Cow position:
               
chr1:100474449-100474284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr1:10941887-10942045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr1:10964499-10964341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr1:38277815-38277979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr1:102648490-102648327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 28
               

               
Conread position:
               
279-448
               

               
Cow position:
               
chr1:11887637-11887813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
279-449
               

               
Cow position:
               
chr1:21955162-21955326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
279-449
               

               
Cow position:
               
chr1:29626701-29626865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
134, 18
               

               
Conread position:
               
279-449
               

               
Cow position:
               
chr1:64458182-64458012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr1:874874-874700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
279-457
               

               
Cow position:
               
chr1:63212048-63212219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
279-466
               

               
Cow position:
               
chr1:484253-484435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
280-431
               

               
Cow position:
               
chr1:8134134-8133988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
280-442
               

               
Cow position:
               
chr1:5872565-5872725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
280-443
               

               
Cow position:
               
chr1:80423524-80423679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
128, 14
               

               
Conread position:
               
280-446
               

               
Cow position:
               
chr1:61005348-61005512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
134, 19
               

               
Conread position:
               
280-446
               

               
Cow position:
               
chr1:61885121-61884963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
280-446
               

               
Cow position:
               
chr1:81568820-81568978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
133, 27
               

               
Conread position:
               
280-447
               

               
Cow position:
               
chr1:2075141-2075302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
280-447
               

               
Cow position:
               
chr1:32014401-32014245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
280-447
               

               
Cow position:
               
chr1:41022626-41022468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
280-447
               

               
Cow position:
               
chr1:65318787-65318624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
280-449
               

               
Cow position:
               
chr1:62519575-62519410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
133, 27
               

               
Conread position:
               
280-449
               

               
Cow position:
               
chr1:88913529-88913367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
280-449
               

               
Cow position:
               
chr1:89297898-89298063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
134, 30
               

               
Conread position:
               
280-449
               

               
Cow position:
               
chr1:89301507-89301672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
134, 30
               

               
Conread position:
               
280-450
               

               
Cow position:
               
chr1:81391131-81390969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
112, 27
               

               
Conread position:
               
280-450
               

               
Cow position:
               
chr1:94823175-94823346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
133, 34
               

               
Conread position:
               
280-450
               

               
Cow position:
               
chr1:95558248-95558083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
280-456
               

               
Cow position:
               
chr1:5479443-5479619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
280-460
               

               
Cow position:
               
chr1:86061768-86061957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
281-442
               

               
Cow position:
               
chr1:20202508-20202357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
133, 26
               

               
Conread position:
               
281-442
               

               
Cow position:
               
chr1:69911320-69911157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
281-446
               

               
Cow position:
               
chr1:26178600-26178761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
281-447
               

               
Cow position:
               
chr1:45315423-45315587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
281-449
               

               
Cow position:
               
chr1:19515409-19515572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
281-449
               

               
Cow position:
               
chr1:56749023-56748859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
281-460
               

               
Cow position:
               
chr1:44321388-44321561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
282-443
               

               
Cow position:
               
chr1:31274780-31274937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
282-444
               

               
Cow position:
               
chr1:82337568-82337728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
132, 71
               

               
Conread position:
               
282-446
               

               
Cow position:
               
chr1:22192977-22192819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
282-447
               

               
Cow position:
               
chr1:7245741-7245908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
282-447
               

               
Cow position:
               
chr1:8287423-8287581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
282-447
               

               
Cow position:
               
chr1:96558639-96558800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
282-449
               

               
Cow position:
               
chr1:81473365-81473202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
282-449
               

               
Cow position:
               
chr1:87149609-87149768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
282-456
               

               
Cow position:
               
chr1:43379154-43379321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
282-460
               

               
Cow position:
               
chr1:46172812-46172642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
100, 25
               

               
Conread position:
               
283-437
               

               
Cow position:
               
chr1:83246634-83246484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
130, 24
               

               
Conread position:
               
283-444
               

               
Cow position:
               
chr1:1915821-1915975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
283-446
               

               
Cow position:
               
chr1:22628450-22628600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
126, 24
               

               
Conread position:
               
283-446
               

               
Cow position:
               
chr1:42592079-42592236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
283-447
               

               
Cow position:
               
chr1:41953793-41953953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-447
               

               
Cow position:
               
chr1:56719546-56719389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-447
               

               
Cow position:
               
chr1:64803891-64804053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
283-447
               

               
Cow position:
               
chr1:73457889-73458050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
283-448
               

               
Cow position:
               
chr1:49297857-49297699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-448
               

               
Cow position:
               
chr1:87888596-87888433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr1:15628485-15628329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr1:22828366-22828523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr1:74929502-74929664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr1:20871350-20871518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr1:21578016-21577850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr1:52509558-52509724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr1:71665728-71665891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr1:74919769-74919938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr1:90267930-90267761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
283-460
               

               
Cow position:
               
chr1:81364470-81364297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
6, 25
               

               
Conread position:
               
283-464
               

               
Cow position:
               
chr1:33080605-33080781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
284-432
               

               
Cow position:
               
chr1:64706107-64705963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
284-445
               

               
Cow position:
               
chr1:77685773-77685930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
284-446
               

               
Cow position:
               
chr1:7966052-7965896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
284-446
               

               
Cow position:
               
chr1:87198033-87197870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
284-448
               

               
Cow position:
               
chr1:71350519-71350679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
284-449
               

               
Cow position:
               
chr1:84815347-84815177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
284-450
               

               
Cow position:
               
chr1:76612927-76613089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
284-450
               

               
Cow position:
               
chr1:79719013-79718853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
284-456
               

               
Cow position:
               
chr1:36688175-36688337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
284-459
               

               
Cow position:
               
chr1:67674403-67674565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
130, 22
               

               
Conread position:
               
284-460
               

               
Cow position:
               
chr1:97986239-97986412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
285-447
               

               
Cow position:
               
chr1:81858697-81858851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
130, 22
               

               
Conread position:
               
285-449
               

               
Cow position:
               
chr1:51860360-51860514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
128, 22
               

               
Conread position:
               
285-456
               

               
Cow position:
               
chr1:50765818-50765652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
285-460
               

               
Cow position:
               
chr1:49433052-49433227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
128, 37
               

               
Conread position:
               
287-446
               

               
Cow position:
               
chr1:759210-759368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
288-440
               

               
Cow position:
               
chr1:57395304-57395451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
122, 19
               

               
Conread position:
               
288-443
               

               
Cow position:
               
chr1:11107448-11107297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
288-444
               

               
Cow position:
               
chr1:95618842-95618694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 19
               

               
Conread position:
               
288-447
               

               
Cow position:
               
chr1:16766885-16767039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
288-447
               

               
Cow position:
               
chr1:61846359-61846193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
288-447
               

               
Cow position:
               
chr1:69411494-69411648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
288-447
               

               
Cow position:
               
chr1:96201114-96201267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
288-447
               

               
Cow position:
               
chr1:100513098-100512944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
288-448
               

               
Cow position:
               
chr1:68710485-68710326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
288-449
               

               
Cow position:
               
chr1:60403970-60403813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 19
               

               
Conread position:
               
288-460
               

               
Cow position:
               
chr1:6381977-6381809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
289-439
               

               
Cow position:
               
chr1:48695348-48695492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
125, 25
               

               
Conread position:
               
295-456
               

               
Cow position:
               
chr1:78029827-78029991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
296-447
               

               
Cow position:
               
chr1:70297479-70297327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
300-456
               

               
Cow position:
               
chr1:101791923-101792078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
308-449
               

               
Cow position:
               
chr1:31340581-31340724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
309-431
               

               
Cow position:
               
chr1:31725618-31725494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
309-447
               

               
Cow position:
               
chr1:91811968-91811826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
310-447
               

               
Cow position:
               
chr1:150738-150876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 72
               

               
Conread position:
               
310-447
               

               
Cow position:
               
chr1:47190807-47190946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
310-447
               

               
Cow position:
               
chr1:70025181-70025320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
310-453
               

               
Cow position:
               
chr1:48447655-48447510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
311-420
               

               
Cow position:
               
chr1:1056024-1056132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
311-437
               

               
Cow position:
               
chr1:716401-716528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 62
               

               
Conread position:
               
311-437
               

               
Cow position:
               
chr1:49082930-49082802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
311-439
               

               
Cow position:
               
chr1:73397887-73398017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr1:30035408-30035272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
104, 116
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr1:40181437-40181576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr1:60987176-60987038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr1:76518609-76518471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr1:78034721-78034855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr1:92524201-92524063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
311-448
               

               
Cow position:
               
chr1:29329730-29329589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
311-449
               

               
Cow position:
               
chr1:14308845-14308985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
311-449
               

               
Cow position:
               
chr1:33409439-33409578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
102, 81
               

               
Conread position:
               
311-450
               

               
Cow position:
               
chr1:23373045-23372905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
311-450
               

               
Cow position:
               
chr1:31765186-31765327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
311-453
               

               
Cow position:
               
chr1:2972104-2971961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
102, 137
               

               
Conread position:
               
312-447
               

               
Cow position:
               
chr1:22461056-22461189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
313-404
               

               
Cow position:
               
chr1:80312066-80312159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
313-421
               

               
Cow position:
               
chr1:72650379-72650490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
313-444
               

               
Cow position:
               
chr1:55357107-55357243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
313-445
               

               
Cow position:
               
chr1:6941648-6941519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
313-445
               

               
Cow position:
               
chr1:98467984-98467849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr1:20125977-20125842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr1:62964450-62964316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
97, 63
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr1:71228277-71228142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr1:73551320-73551460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr1:43296532-43296670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr1:47886298-47886431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr1:49980890-49980759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr1:54258751-54258616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
100, 116
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr1:60045169-60045034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
67, 73
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr1:67529238-67529104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
102, 40
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr1:86340276-86340419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr1:99609549-99609417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
313-448
               

               
Cow position:
               
chr1:31846180-31846045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
313-448
               

               
Cow position:
               
chr1:63905082-63905211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
101, 45
               

               
Conread position:
               
313-448
               

               
Cow position:
               
chr1:86503178-86503316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
313-449
               

               
Cow position:
               
chr1:38055324-38055454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 8
               

               
Conread position:
               
313-449
               

               
Cow position:
               
chr1:52139446-52139581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
313-449
               

               
Cow position:
               
chr1:81668630-81668770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
313-449
               

               
Cow position:
               
chr1:83072624-83072488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 63
               

               
Conread position:
               
313-449
               

               
Cow position:
               
chr1:83677143-83677277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
313-450
               

               
Cow position:
               
chr1:23633745-23633884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
313-451
               

               
Cow position:
               
chr1:52385094-52384953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
313-451
               

               
Cow position:
               
chr1:86113214-86113355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr1:2975807-2975953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr1:21093301-21093158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 83
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr1:26984194-26984050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
101, 137
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr1:53394257-53394115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 113
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr1:57089496-57089638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr1:80385304-80385446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr1:90879558-90879695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
313-457
               

               
Cow position:
               
chr1:43388872-43389012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 41
               

               
Conread position:
               
313-459
               

               
Cow position:
               
chr1:22394491-22394638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
101, 60
               

               
Conread position:
               
313-460
               

               
Cow position:
               
chr1:43311586-43311735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
101, 138
               

               
Conread position:
               
313-460
               

               
Cow position:
               
chr1:78793821-78793966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 52
               

               
Conread position:
               
314-437
               

               
Cow position:
               
chr1:67743557-67743677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
314-446
               

               
Cow position:
               
chr1:88360066-88359928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
314-455
               

               
Cow position:
               
chr1:42797060-42796919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 53
               

               
Conread position:
               
314-456
               

               
Cow position:
               
chr1:14006306-14006163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 141
               

               
Conread position:
               
314-456
               

               
Cow position:
               
chr1:19599179-19599320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
100, 48
               

               
Conread position:
               
314-456
               

               
Cow position:
               
chr1:69691531-69691674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 136
               

               
Conread position:
               
315-447
               

               
Cow position:
               
chr1:34856445-34856579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
315-447
               

               
Cow position:
               
chr1:73534459-73534592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 76
               

               
Conread position:
               
315-447
               

               
Cow position:
               
chr1:99629342-99629213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
315-450
               

               
Cow position:
               
chr1:72813797-72813663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
315-456
               

               
Cow position:
               
chr1:61134595-61134453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
99, 135
               

               
Conread position:
               
318-447
               

               
Cow position:
               
chr1:70146731-70146862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
318-447
               

               
Cow position:
               
chr1:95049686-95049817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
319-447
               

               
Cow position:
               
chr1:6031803-6031673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
321-426
               

               
Cow position:
               
chr1:66693724-66693831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
321-445
               

               
Cow position:
               
chr1:81638716-81638599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
321-446
               

               
Cow position:
               
chr1:101267827-101267954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:731793-731924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:10523876-10523749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:11729345-11729224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:18764446-18764572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:31630109-31630238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:49334215-49334344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:52496947-52496820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:92792229-92792100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 124
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr1:96019405-96019277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
321-449
               

               
Cow position:
               
chr1:31807037-31806908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
321-450
               

               
Cow position:
               
chr1:3666854-3666985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
322-447
               

               
Cow position:
               
chr1:1053755-1053630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
91, 112
               

               
Conread position:
               
322-447
               

               
Cow position:
               
chr1:102797822-102797949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
322-449
               

               
Cow position:
               
chr1:70422480-70422351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
322-456
               

               
Cow position:
               
chr1:46795931-46795799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
325-447
               

               
Cow position:
               
chr1:15206704-15206823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
325-456
               

               
Cow position:
               
chr1:48581300-48581170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
327-444
               

               
Cow position:
               
chr1:93385244-93385127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
327-445
               

               
Cow position:
               
chr1:11913707-11913827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
327-446
               

               
Cow position:
               
chr1:54645600-54645477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
327-447
               

               
Cow position:
               
chr1:83606279-83606401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
327-460
               

               
Cow position:
               
chr1:53521082-53520948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
327-462
               

               
Cow position:
               
chr1:50843680-50843817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
329-439
               

               
Cow position:
               
chr1:12090513-12090401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
330-457
               

               
Cow position:
               
chr1:40530936-40531062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 41
               

               
Conread position:
               
332-447
               

               
Cow position:
               
chr1:52487815-52487931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
337-447
               

               
Cow position:
               
chr1:67539720-67539608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
338-442
               

               
Cow position:
               
chr1:12878440-12878335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
340-456
               

               
Cow position:
               
chr1:37543628-37543745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
340-457
               

               
Cow position:
               
chr1:32001167-32001281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
73, 27
               
Show alignments to all cow chromosomes.