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Cow genome map

           
Conread name:
           
rmed12c_c19.y1
        

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:31118923-31118645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
28-276
               

               
Cow position:
               
chr9:50345115-50344852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
147-456
               

               
Cow position:
               
chr9:12355459-12355780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
227-364
               

               
Cow position:
               
chr9:11319957-11319820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
229-444
               

               
Cow position:
               
chr9:11161100-11161312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
229-445
               

               
Cow position:
               
chr9:42061852-42062083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
243-446
               

               
Cow position:
               
chr9:26279388-26279184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
252-446
               

               
Cow position:
               
chr9:13670429-13670618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
253-447
               

               
Cow position:
               
chr9:17026994-17027183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
254-447
               

               
Cow position:
               
chr9:40221385-40221200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
255-447
               

               
Cow position:
               
chr9:16115802-16115622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
159, 32
               

               
Conread position:
               
255-449
               

               
Cow position:
               
chr9:35028366-35028177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
159, 52
               

               
Conread position:
               
256-447
               

               
Cow position:
               
chr9:25375933-25375750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
258-439
               

               
Cow position:
               
chr9:3573269-3573444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
155, 34
               

               
Conread position:
               
260-433
               

               
Cow position:
               
chr9:26578402-26578230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
260-445
               

               
Cow position:
               
chr9:34917368-34917201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
260-445
               

               
Cow position:
               
chr9:59897402-59897577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
154, 49
               

               
Conread position:
               
260-447
               

               
Cow position:
               
chr9:1443825-1443631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
261-446
               

               
Cow position:
               
chr9:22447485-22447309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 10
               

               
Conread position:
               
262-446
               

               
Cow position:
               
chr9:9596141-9595967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
152, 10
               

               
Conread position:
               
262-447
               

               
Cow position:
               
chr9:63785103-63784928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
263-449
               

               
Cow position:
               
chr9:33838501-33838325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
263-449
               

               
Cow position:
               
chr9:34196001-34196182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
263-453
               

               
Cow position:
               
chr9:48563884-48564072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
263-464
               

               
Cow position:
               
chr9:44526918-44527123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
265-430
               

               
Cow position:
               
chr9:50779623-50779785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
265-439
               

               
Cow position:
               
chr9:50647879-50648045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
265-444
               

               
Cow position:
               
chr9:30402618-30402442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
139, 42
               

               
Conread position:
               
265-447
               

               
Cow position:
               
chr9:12280785-12280957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
265-447
               

               
Cow position:
               
chr9:35295506-35295676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
25, 6
               

               
Conread position:
               
265-449
               

               
Cow position:
               
chr9:41470297-41470110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
265-456
               

               
Cow position:
               
chr9:55495183-55494992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
149, 7
               

               
Conread position:
               
266-446
               

               
Cow position:
               
chr9:38624812-38624639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
147, 41
               

               
Conread position:
               
266-447
               

               
Cow position:
               
chr9:8467870-8468043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
266-447
               

               
Cow position:
               
chr9:8613402-8613225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
266-449
               

               
Cow position:
               
chr9:24000941-24000770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
148, 7
               

               
Conread position:
               
267-399
               

               
Cow position:
               
chr9:11216363-11216238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
267-431
               

               
Cow position:
               
chr9:3946335-3946178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
267-436
               

               
Cow position:
               
chr9:45170572-45170406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
267-439
               

               
Cow position:
               
chr9:48730241-48730409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
146, 40
               

               
Conread position:
               
267-441
               

               
Cow position:
               
chr9:7543443-7543283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
267-445
               

               
Cow position:
               
chr9:41644939-41644766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
141, 22
               

               
Conread position:
               
267-445
               

               
Cow position:
               
chr9:55173826-55173654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
142, 22
               

               
Conread position:
               
267-446
               

               
Cow position:
               
chr9:11380836-11380661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 31
               

               
Conread position:
               
267-446
               

               
Cow position:
               
chr9:23840592-23840409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr9:17677303-17677124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr9:43623072-43623254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr9:53632114-53631937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
267-449
               

               
Cow position:
               
chr9:6929982-6929803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
113, 40
               

               
Conread position:
               
267-456
               

               
Cow position:
               
chr9:28315228-28315423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
5, 49
               

               
Conread position:
               
267-460
               

               
Cow position:
               
chr9:9724066-9723877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
139, 40
               

               
Conread position:
               
269-449
               

               
Cow position:
               
chr9:46344740-46344924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
270-446
               

               
Cow position:
               
chr9:51620260-51620430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
142, 37
               

               
Conread position:
               
270-447
               

               
Cow position:
               
chr9:44709639-44709815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
271-442
               

               
Cow position:
               
chr9:5342430-5342266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
271-445
               

               
Cow position:
               
chr9:32388167-32388000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
271-445
               

               
Cow position:
               
chr9:54640007-54639835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
271-447
               

               
Cow position:
               
chr9:13744122-13743944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
271-447
               

               
Cow position:
               
chr9:34279243-34279067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
272-445
               

               
Cow position:
               
chr9:55284523-55284360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
272-446
               

               
Cow position:
               
chr9:20579770-20579609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
142, 35
               

               
Conread position:
               
272-456
               

               
Cow position:
               
chr9:30137939-30138113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
273-443
               

               
Cow position:
               
chr9:45444979-45445145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 16
               

               
Conread position:
               
274-439
               

               
Cow position:
               
chr9:62136297-62136136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
274-444
               

               
Cow position:
               
chr9:8537126-8537291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
274-446
               

               
Cow position:
               
chr9:9459809-9459969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
274-446
               

               
Cow position:
               
chr9:9551909-9552075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
140, 20
               

               
Conread position:
               
274-447
               

               
Cow position:
               
chr9:34423438-34423607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
139, 40
               

               
Conread position:
               
274-447
               

               
Cow position:
               
chr9:35466712-35466536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
274-447
               

               
Cow position:
               
chr9:41282831-41283001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
274-447
               

               
Cow position:
               
chr9:44141990-44141821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
139, 28
               

               
Conread position:
               
275-425
               

               
Cow position:
               
chr9:28866272-28866127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
275-444
               

               
Cow position:
               
chr9:31215900-31216058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
275-444
               

               
Cow position:
               
chr9:31625946-31626117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
275-445
               

               
Cow position:
               
chr9:32662221-32662047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
275-446
               

               
Cow position:
               
chr9:27279127-27279294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
275-446
               

               
Cow position:
               
chr9:28747702-28747535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
275-446
               

               
Cow position:
               
chr9:34286610-34286784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
275-446
               

               
Cow position:
               
chr9:35832793-35832634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
140, 31
               

               
Conread position:
               
275-446
               

               
Cow position:
               
chr9:43352789-43352961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:3847215-3847388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:5110676-5110844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:6839808-6839979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
134, 33
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:6954437-6954263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:21292587-21292422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:34760550-34760378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:36457817-36457985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:51891072-51891232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:54411344-54411172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
275-447
               

               
Cow position:
               
chr9:61019550-61019376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr9:11309669-11309848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 116
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr9:13141350-13141526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr9:52130832-52130998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr9:52638349-52638179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
275-450
               

               
Cow position:
               
chr9:29984277-29984453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 36
               

               
Conread position:
               
275-450
               

               
Cow position:
               
chr9:35306527-35306357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
275-450
               

               
Cow position:
               
chr9:50977435-50977264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
135, 32
               

               
Conread position:
               
275-452
               

               
Cow position:
               
chr9:19771181-19771352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
139, 36
               

               
Conread position:
               
275-456
               

               
Cow position:
               
chr9:14738073-14738243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
275-460
               

               
Cow position:
               
chr9:16811840-16811656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
139, 70
               

               
Conread position:
               
276-434
               

               
Cow position:
               
chr9:20394492-20394342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
276-438
               

               
Cow position:
               
chr9:34001182-34001015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
276-439
               

               
Cow position:
               
chr9:55013520-55013353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
276-444
               

               
Cow position:
               
chr9:18253098-18252930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
106, 31
               

               
Conread position:
               
276-444
               

               
Cow position:
               
chr9:40507771-40507614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
139, 23
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr9:2397632-2397793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr9:8645077-8645252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr9:11393390-11393221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr9:28156522-28156679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr9:28718538-28718698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr9:33597795-33597972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr9:35403401-35403569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 91
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr9:56827282-56827462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
276-448
               

               
Cow position:
               
chr9:44822501-44822337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
276-449
               

               
Cow position:
               
chr9:5772858-5772689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
276-449
               

               
Cow position:
               
chr9:9573142-9573311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
276-449
               

               
Cow position:
               
chr9:52689792-52689623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
276-449
               

               
Cow position:
               
chr9:59586137-59586299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
276-456
               

               
Cow position:
               
chr9:151688-151862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 38
               

               
Conread position:
               
276-456
               

               
Cow position:
               
chr9:9753584-9753397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
276-459
               

               
Cow position:
               
chr9:20322270-20322096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
276-460
               

               
Cow position:
               
chr9:35932993-35932813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
277-433
               

               
Cow position:
               
chr9:32019503-32019352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
277-437
               

               
Cow position:
               
chr9:35049302-35049456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-439
               

               
Cow position:
               
chr9:7611965-7611813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
277-439
               

               
Cow position:
               
chr9:58440561-58440397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
277-444
               

               
Cow position:
               
chr9:5068660-5068824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
277-445
               

               
Cow position:
               
chr9:26715075-26715239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-445
               

               
Cow position:
               
chr9:38941614-38941448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
277-445
               

               
Cow position:
               
chr9:53323964-53323800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
277-446
               

               
Cow position:
               
chr9:5220994-5220825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
277-446
               

               
Cow position:
               
chr9:34024522-34024684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
277-446
               

               
Cow position:
               
chr9:34375103-34374939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
129, 16
               

               
Conread position:
               
277-446
               

               
Cow position:
               
chr9:39011652-39011484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
133, 35
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr9:8998175-8998335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr9:9091286-9091119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr9:11447984-11447822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr9:15806109-15805937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr9:17769145-17769304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr9:26477034-26477202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr9:35547087-35547254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-447
               

               
Cow position:
               
chr9:41416152-41416319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr9:9311681-9311846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr9:20017220-20017386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr9:20828726-20828894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-449
               

               
Cow position:
               
chr9:26557781-26557956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
277-450
               

               
Cow position:
               
chr9:8901407-8901239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
277-454
               

               
Cow position:
               
chr9:60741361-60741191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-455
               

               
Cow position:
               
chr9:8767592-8767423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
133, 30
               

               
Conread position:
               
277-455
               

               
Cow position:
               
chr9:52406992-52407157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
277-456
               

               
Cow position:
               
chr9:17785746-17785572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
137, 37
               

               
Conread position:
               
277-459
               

               
Cow position:
               
chr9:5327080-5327257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
137, 38
               

               
Conread position:
               
278-437
               

               
Cow position:
               
chr9:11123661-11123507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
135, 36
               

               
Conread position:
               
278-445
               

               
Cow position:
               
chr9:7806130-7805977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 29
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr9:1878174-1878016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
136, 39
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr9:1884324-1884144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr9:16216801-16216967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr9:33114164-33114332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr9:62724366-62724521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
278-449
               

               
Cow position:
               
chr9:28722521-28722692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
138, 36
               

               
Conread position:
               
278-455
               

               
Cow position:
               
chr9:13993586-13993758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
278-456
               

               
Cow position:
               
chr9:52763929-52763766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
136, 32
               

               
Conread position:
               
279-439
               

               
Cow position:
               
chr9:11030009-11030166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
279-443
               

               
Cow position:
               
chr9:40215066-40215229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
279-445
               

               
Cow position:
               
chr9:34362561-34362722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
279-446
               

               
Cow position:
               
chr9:37198952-37199112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr9:8992355-8992193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr9:18425736-18425898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr9:36634329-36634493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
130, 31
               

               
Conread position:
               
279-448
               

               
Cow position:
               
chr9:34697478-34697312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
279-449
               

               
Cow position:
               
chr9:13722315-13722150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
279-449
               

               
Cow position:
               
chr9:27261568-27261402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
279-449
               

               
Cow position:
               
chr9:32670131-32669959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
279-449
               

               
Cow position:
               
chr9:49679935-49680102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
280-446
               

               
Cow position:
               
chr9:24887031-24887191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
133, 27
               

               
Conread position:
               
280-448
               

               
Cow position:
               
chr9:19034180-19034344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
280-449
               

               
Cow position:
               
chr9:45728603-45728767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
134, 23
               

               
Conread position:
               
280-460
               

               
Cow position:
               
chr9:50310936-50310764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
281-447
               

               
Cow position:
               
chr9:1751156-1751324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
281-447
               

               
Cow position:
               
chr9:54677085-54677250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
281-449
               

               
Cow position:
               
chr9:43679947-43680108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
281-450
               

               
Cow position:
               
chr9:12786649-12786484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
281-450
               

               
Cow position:
               
chr9:33128033-33127865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
125, 13
               

               
Conread position:
               
282-441
               

               
Cow position:
               
chr9:16826374-16826215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
282-446
               

               
Cow position:
               
chr9:12337728-12337887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
282-446
               

               
Cow position:
               
chr9:38792843-38793001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
282-446
               

               
Cow position:
               
chr9:40984332-40984490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
282-447
               

               
Cow position:
               
chr9:34484419-34484581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
282-447
               

               
Cow position:
               
chr9:63134211-63134381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
8, 33
               

               
Conread position:
               
282-449
               

               
Cow position:
               
chr9:20406483-20406640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
282-456
               

               
Cow position:
               
chr9:53061481-53061656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
282-460
               

               
Cow position:
               
chr9:36410522-36410349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
283-426
               

               
Cow position:
               
chr9:2984897-2985036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
283-427
               

               
Cow position:
               
chr9:52651663-52651523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
283-436
               

               
Cow position:
               
chr9:43345564-43345713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-447
               

               
Cow position:
               
chr9:19657145-19656990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-447
               

               
Cow position:
               
chr9:22637921-22638088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
283-448
               

               
Cow position:
               
chr9:52755023-52754863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 24
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr9:6397957-6397796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr9:8573213-8573381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 24
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr9:30665171-30665000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr9:34276384-34276222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 24
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr9:34410564-34410408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
283-449
               

               
Cow position:
               
chr9:47510741-47510582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
283-450
               

               
Cow position:
               
chr9:47517026-47517188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr9:31344781-31344613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr9:32348994-32348820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
284-444
               

               
Cow position:
               
chr9:4263263-4263107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
131, 14
               

               
Conread position:
               
284-445
               

               
Cow position:
               
chr9:51566668-51566511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
284-447
               

               
Cow position:
               
chr9:27345759-27345598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
284-449
               

               
Cow position:
               
chr9:25583661-25583818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
284-455
               

               
Cow position:
               
chr9:37016731-37016891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
284-456
               

               
Cow position:
               
chr9:44396489-44396656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 22
               

               
Conread position:
               
285-427
               

               
Cow position:
               
chr9:12495045-12495183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 22
               

               
Conread position:
               
285-456
               

               
Cow position:
               
chr9:44759096-44758937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
288-447
               

               
Cow position:
               
chr9:39148916-39149065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
288-449
               

               
Cow position:
               
chr9:63169803-63169960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
292-447
               

               
Cow position:
               
chr9:21780761-21780910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
298-450
               

               
Cow position:
               
chr9:61286600-61286751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
300-447
               

               
Cow position:
               
chr9:46930301-46930445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
304-447
               

               
Cow position:
               
chr9:58369147-58369010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 7
               

               
Conread position:
               
306-406
               

               
Cow position:
               
chr9:10133193-10133094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
307-442
               

               
Cow position:
               
chr9:1841418-1841556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
310-447
               

               
Cow position:
               
chr9:13945452-13945592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
310-447
               

               
Cow position:
               
chr9:27308028-27307896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 56
               

               
Conread position:
               
311-429
               

               
Cow position:
               
chr9:901591-901471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
311-445
               

               
Cow position:
               
chr9:18163506-18163371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr9:29185289-29185151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr9:37955323-37955185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
311-447
               

               
Cow position:
               
chr9:54986310-54986169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
311-448
               

               
Cow position:
               
chr9:40855977-40855838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
311-449
               

               
Cow position:
               
chr9:27686434-27686573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
95, 6
               

               
Conread position:
               
311-455
               

               
Cow position:
               
chr9:48115535-48115672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
311-459
               

               
Cow position:
               
chr9:28342804-28342654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 140
               

               
Conread position:
               
312-447
               

               
Cow position:
               
chr9:33541904-33542041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
313-427
               

               
Cow position:
               
chr9:20755906-20755790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
313-431
               

               
Cow position:
               
chr9:29091623-29091743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
313-435
               

               
Cow position:
               
chr9:26057576-26057456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
313-437
               

               
Cow position:
               
chr9:20712691-20712812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
101, 44
               

               
Conread position:
               
313-438
               

               
Cow position:
               
chr9:6726899-6727020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 93
               

               
Conread position:
               
313-439
               

               
Cow position:
               
chr9:8919857-8919978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
97, 44
               

               
Conread position:
               
313-439
               

               
Cow position:
               
chr9:31514082-31513954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
313-440
               

               
Cow position:
               
chr9:20355721-20355846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr9:1712855-1712721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr9:12226132-12225993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr9:26394495-26394364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr9:33822970-33823103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
101, 9
               

               
Conread position:
               
313-446
               

               
Cow position:
               
chr9:34707457-34707327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 63
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:7859785-7859648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 101
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:10010665-10010796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:11200087-11199951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:26102585-26102714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:27495084-27495223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:32307381-32307245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:38846488-38846347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:40603520-40603654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:41964879-41964749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:47214697-47214559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:48282047-48282188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:56032464-56032329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
313-447
               

               
Cow position:
               
chr9:63185844-63185709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
101, 62
               

               
Conread position:
               
313-449
               

               
Cow position:
               
chr9:20942766-20942628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
313-449
               

               
Cow position:
               
chr9:37951047-37950909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
313-449
               

               
Cow position:
               
chr9:61909237-61909376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
313-451
               

               
Cow position:
               
chr9:14357265-14357405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
313-455
               

               
Cow position:
               
chr9:20637228-20637366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 53
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr9:14975076-14974925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 144
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr9:31346802-31346944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 52
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr9:31359458-31359598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 45
               

               
Conread position:
               
313-456
               

               
Cow position:
               
chr9:45749285-45749431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
90, 69
               

               
Conread position:
               
313-459
               

               
Cow position:
               
chr9:6934228-6934075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
313-462
               

               
Cow position:
               
chr9:55529656-55529799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
100, 44
               

               
Conread position:
               
313-464
               

               
Cow position:
               
chr9:9243397-9243556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
314-447
               

               
Cow position:
               
chr9:22443769-22443641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
314-449
               

               
Cow position:
               
chr9:39709707-39709845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
315-434
               

               
Cow position:
               
chr9:39142513-39142391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
315-447
               

               
Cow position:
               
chr9:55288034-55287903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
315-449
               

               
Cow position:
               
chr9:53123941-53124077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
316-443
               

               
Cow position:
               
chr9:1403681-1403552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
316-447
               

               
Cow position:
               
chr9:15215834-15215701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
321-446
               

               
Cow position:
               
chr9:64310918-64310791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr9:5164127-5163999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr9:9815271-9815399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr9:35167027-35167162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
321-447
               

               
Cow position:
               
chr9:64629502-64629378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 50
               

               
Conread position:
               
321-448
               

               
Cow position:
               
chr9:18216051-18215923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
321-449
               

               
Cow position:
               
chr9:54598531-54598661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
321-451
               

               
Cow position:
               
chr9:52659983-52659853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
322-410
               

               
Cow position:
               
chr9:60138654-60138742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
323-434
               

               
Cow position:
               
chr9:35360429-35360316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
324-449
               

               
Cow position:
               
chr9:41394786-41394659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
325-447
               

               
Cow position:
               
chr9:44093220-44093096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
327-445
               

               
Cow position:
               
chr9:9443744-9443617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
334-447
               

               
Cow position:
               
chr9:22434057-22433942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
336-447
               

               
Cow position:
               
chr9:1729801-1729688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               
Show alignments to all cow chromosomes.