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Cow genome map

           
Conread name:
           
rmed21c_p2.y1
        

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:51469784-51469619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:90975842-90976066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:20537436-20537226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:64803863-64804083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
40, 116
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:72422172-72422389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
37, 114
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:95153479-95153241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr1:31255994-31256212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:31934738-31934519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr1:98415827-98415595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr1:76612898-76613136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 100
               

               
Conread position:
               
2-99
               

               
Cow position:
               
chr1:75142449-75142351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr1:92384550-92384430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 118
               

               
Conread position:
               
2-158
               

               
Cow position:
               
chr1:63190714-63190566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
2-159
               

               
Cow position:
               
chr1:36306911-36306761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr1:40206852-40207030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-168
               

               
Cow position:
               
chr1:43340400-43340557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:65160363-65160188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:83222221-83222044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr1:64811470-64811288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr1:81615883-81615703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr1:30027999-30028187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr1:93744079-93743882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr1:42797109-42796915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr1:38419260-38419046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:41137915-41138122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:73020429-73020640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:81477630-81477847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr1:852406-852191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 95
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr1:68400035-68400266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 216
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr1:45578776-45578559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:20104499-20104285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:38706620-38706835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:42537068-42537304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
39, 165
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:46939644-46939866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:54267705-54267918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:55230206-55229995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:67529289-67529074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:72034695-72034905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:81391155-81390941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:85339610-85339406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 105
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr1:79630686-79630885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr1:83677092-83677307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr1:75250345-75250124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr1:21561253-21561024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
37, 115
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr1:67919361-67919147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr1:68730237-68730015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
2-231
               

               
Cow position:
               
chr1:74751395-74751620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr1:75080306-75080571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 214
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr1:89146640-89146820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 114
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr1:709671-709862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr1:33720336-33720127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 102
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr1:61741732-61741945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:79178863-79178649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:99637019-99637233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr1:71119753-71119540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr1:73545676-73545897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
38, 114
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr1:56226014-56225797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr1:102730526-102730756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
166, 103
               

               
Conread position:
               
4-152
               

               
Cow position:
               
chr1:88911576-88911728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr1:98897459-98897672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 55
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr1:97232202-97231981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr1:1980879-1981093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr1:72841571-72841355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr1:102424026-102423813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr1:3941985-3942196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr1:31347702-31347915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr1:57297739-57297501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 143
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr1:78794005-78794212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr1:1496296-1496520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 95
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr1:15206651-15206860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr1:21093348-21093129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
166, 40
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr1:24656487-24656257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 138
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr1:95835564-95835788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr1:70094569-70094352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr1:42175959-42175738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr1:102754081-102753856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
230, 90
               

               
Conread position:
               
5-151
               

               
Cow position:
               
chr1:67346387-67346243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
5-158
               

               
Cow position:
               
chr1:20205576-20205427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
5-168
               

               
Cow position:
               
chr1:64706132-64705976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 101
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr1:95828905-95829079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr1:69378368-69378577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr1:54156504-54156713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
36, 111
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr1:52661946-52662154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr1:70416531-70416741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
164, 100
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr1:81364493-81364279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr1:98347642-98347868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 163
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr1:98551962-98551739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
5-229
               

               
Cow position:
               
chr1:31357287-31357497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chr1:76285740-76285502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 153
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr1:47883365-47883609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
36, 197
               

               
Conread position:
               
6-185
               

               
Cow position:
               
chr1:50906452-50906623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
6-206
               

               
Cow position:
               
chr1:92999279-92999067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
6-220
               

               
Cow position:
               
chr1:23998695-23998912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
6-220
               

               
Cow position:
               
chr1:92369979-92369760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 157
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr1:9637259-9637050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr1:49334163-49334371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr1:7443211-7442995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr1:43148309-43148526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr1:63434569-63434787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr1:75745089-75744881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr1:81473387-81473174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 110
               

               
Conread position:
               
6-228
               

               
Cow position:
               
chr1:69265056-69264821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
6-229
               

               
Cow position:
               
chr1:99642140-99642357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
6-245
               

               
Cow position:
               
chr1:43296483-43296726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
6-251
               

               
Cow position:
               
chr1:69250661-69250427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
7-123
               

               
Cow position:
               
chr1:65883442-65883325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
7-135
               

               
Cow position:
               
chr1:59698879-59698750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
7-141
               

               
Cow position:
               
chr1:26447975-26447837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
7-156
               

               
Cow position:
               
chr1:43052274-43052422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 137
               

               
Conread position:
               
7-178
               

               
Cow position:
               
chr1:59020898-59020716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
7-187
               

               
Cow position:
               
chr1:48447698-48447521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
7-216
               

               
Cow position:
               
chr1:86110517-86110718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
7-220
               

               
Cow position:
               
chr1:11708796-11708996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
7-220
               

               
Cow position:
               
chr1:88913548-88913342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr1:7748444-7748234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr1:7752608-7752400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr1:53403009-53402802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
162, 30
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr1:101177751-101177536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr1:6590265-6590053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr1:46031189-46030979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr1:70483107-70483315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr1:79004204-79003995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr1:95153102-95152890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
7-229
               

               
Cow position:
               
chr1:72068606-72068823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr1:5283998-5284221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr1:46245508-46245743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
7-254
               

               
Cow position:
               
chr1:101883163-101883404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
7-256
               

               
Cow position:
               
chr1:53540814-53540562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
8-99
               

               
Cow position:
               
chr1:78690462-78690371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-123
               

               
Cow position:
               
chr1:46220956-46221070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
8-157
               

               
Cow position:
               
chr1:89835749-89835599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
8-182
               

               
Cow position:
               
chr1:17317116-17317300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
8-187
               

               
Cow position:
               
chr1:99031750-99031924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
161, 96
               

               
Conread position:
               
8-206
               

               
Cow position:
               
chr1:96136708-96136503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
88, 153
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr1:53457039-53456840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
8-220
               

               
Cow position:
               
chr1:84815361-84815153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
162, 108
               

               
Conread position:
               
8-220
               

               
Cow position:
               
chr1:90904530-90904734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr1:6986498-6986722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
33, 220
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr1:38544019-38544233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr1:51446109-51445905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr1:55428726-55428937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr1:96081702-96081499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
162, 33
               

               
Conread position:
               
8-229
               

               
Cow position:
               
chr1:101835043-101834829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
9-102
               

               
Cow position:
               
chr1:22466619-22466713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
9-167
               

               
Cow position:
               
chr1:34767520-34767365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
9-202
               

               
Cow position:
               
chr1:75227099-75227280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
9-216
               

               
Cow position:
               
chr1:98912234-98912027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr1:52435501-52435295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr1:94226318-94226532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
32, 183
               

               
Conread position:
               
9-220
               

               
Cow position:
               
chr1:101159153-101158938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
9-221
               

               
Cow position:
               
chr1:73534416-73534620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
9-221
               

               
Cow position:
               
chr1:84103832-84104040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr1:1380227-1380016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 97
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr1:22824135-22823924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
30, 96
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr1:69411469-69411678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr1:71945854-71946065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
9-228
               

               
Cow position:
               
chr1:43855515-43855312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
9-229
               

               
Cow position:
               
chr1:3923578-3923788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
9-229
               

               
Cow position:
               
chr1:18936611-18936824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
9-229
               

               
Cow position:
               
chr1:28563335-28563554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:92188185-92187959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
9-268
               

               
Cow position:
               
chr1:9478392-9478646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
161, 93
               

               
Conread position:
               
10-185
               

               
Cow position:
               
chr1:73397846-73398017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:69176512-69176707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
10-203
               

               
Cow position:
               
chr1:98317338-98317526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
10-212
               

               
Cow position:
               
chr1:72069881-72070084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
159, 32
               

               
Conread position:
               
10-215
               

               
Cow position:
               
chr1:88231541-88231738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
10-216
               

               
Cow position:
               
chr1:22231876-22231674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
10-217
               

               
Cow position:
               
chr1:81290729-81290532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr1:89076398-89076609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
10-220
               

               
Cow position:
               
chr1:196781-196983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
10-221
               

               
Cow position:
               
chr1:98556893-98557098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 96
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chr1:77683599-77683371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
10-224
               

               
Cow position:
               
chr1:62469283-62469079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
10-229
               

               
Cow position:
               
chr1:42482425-42482214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
31, 97
               

               
Conread position:
               
10-231
               

               
Cow position:
               
chr1:5010608-5010825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr1:32857287-32857047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
31, 224
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr1:22448017-22448253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
31, 110
               

               
Conread position:
               
10-253
               

               
Cow position:
               
chr1:56719565-56719327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 129
               

               
Conread position:
               
11-199
               

               
Cow position:
               
chr1:3130325-3130506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
159, 62
               

               
Conread position:
               
11-207
               

               
Cow position:
               
chr1:6078123-6077926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
158, 110
               

               
Conread position:
               
11-220
               

               
Cow position:
               
chr1:91023244-91023445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
11-221
               

               
Cow position:
               
chr1:86340237-86340443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
159, 26
               

               
Conread position:
               
11-222
               

               
Cow position:
               
chr1:6394781-6394577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 96
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr1:63994331-63994536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr1:77739949-77739741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr1:78857102-78857310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
11-229
               

               
Cow position:
               
chr1:44507192-44506985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
11-229
               

               
Cow position:
               
chr1:71665710-71665920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
12-123
               

               
Cow position:
               
chr1:50287579-50287692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
12-133
               

               
Cow position:
               
chr1:102611745-102611627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
12-134
               

               
Cow position:
               
chr1:16060785-16060906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
12-166
               

               
Cow position:
               
chr1:44678536-44678376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
12-199
               

               
Cow position:
               
chr1:25956119-25955938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
12-210
               

               
Cow position:
               
chr1:37886564-37886780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
12-218
               

               
Cow position:
               
chr1:14567419-14567613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
12-223
               

               
Cow position:
               
chr1:55685755-55685959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
12-223
               

               
Cow position:
               
chr1:76518647-76518441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
157, 93
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr1:98605481-98605686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
30, 113
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr1:40078013-40077811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
12-229
               

               
Cow position:
               
chr1:65103852-65103631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
12-242
               

               
Cow position:
               
chr1:23055283-23055046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
12-259
               

               
Cow position:
               
chr1:98684124-98683857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 197
               

               
Conread position:
               
13-185
               

               
Cow position:
               
chr1:69911334-69911160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
13-187
               

               
Cow position:
               
chr1:83093083-83092919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
157, 28
               

               
Conread position:
               
13-203
               

               
Cow position:
               
chr1:83641841-83642035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
13-221
               

               
Cow position:
               
chr1:20871334-20871538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
13-221
               

               
Cow position:
               
chr1:92996664-92996870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr1:24132841-24133041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr1:32014414-32014215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr1:61005335-61005543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr1:81515461-81515252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr1:83004887-83004672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
28, 99
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr1:89297885-89298091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr1:89301494-89301700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
13-229
               

               
Cow position:
               
chr1:78782208-78781985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
13-237
               

               
Cow position:
               
chr1:100823262-100823043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
13-255
               

               
Cow position:
               
chr1:92095605-92095359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
14-129
               

               
Cow position:
               
chr1:93235291-93235407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chr1:69442294-69442480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chr1:79169932-79170114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chr1:97321824-97322020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
14-220
               

               
Cow position:
               
chr1:66898273-66898476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
14-221
               

               
Cow position:
               
chr1:628189-627987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
14-222
               

               
Cow position:
               
chr1:92684460-92684674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
14-223
               

               
Cow position:
               
chr1:12222383-12222588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
14-223
               

               
Cow position:
               
chr1:45670873-45670654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 200
               

               
Conread position:
               
14-229
               

               
Cow position:
               
chr1:35162626-35162422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
14-230
               

               
Cow position:
               
chr1:76740451-76740665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 92
               

               
Conread position:
               
15-138
               

               
Cow position:
               
chr1:87521171-87521049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
15-166
               

               
Cow position:
               
chr1:14106388-14106537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr1:500396-500194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr1:1878243-1878039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 92
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr1:10716725-10716516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr1:24777764-24777970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr1:42887060-42887258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
15-227
               

               
Cow position:
               
chr1:47658568-47658359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
15-227
               

               
Cow position:
               
chr1:89388563-89388360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
15-229
               

               
Cow position:
               
chr1:484243-484455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
15-235
               

               
Cow position:
               
chr1:4294565-4294350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
16-133
               

               
Cow position:
               
chr1:73644289-73644407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 106
               

               
Conread position:
               
16-136
               

               
Cow position:
               
chr1:84813249-84813127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
16-166
               

               
Cow position:
               
chr1:101490410-101490267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
16-168
               

               
Cow position:
               
chr1:2935384-2935233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
16-178
               

               
Cow position:
               
chr1:95966256-95966416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
16-192
               

               
Cow position:
               
chr1:47190774-47190945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
16-221
               

               
Cow position:
               
chr1:3962457-3962666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
16-221
               

               
Cow position:
               
chr1:85688404-85688199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
16-222
               

               
Cow position:
               
chr1:74083969-74084168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr1:5751534-5751332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr1:6731398-6731199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr1:8287411-8287611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr1:11226010-11226227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr1:20667531-20667723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr1:31794789-31794986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
154, 26
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr1:62998016-62997818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 25
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr1:78079942-78079738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
16-228
               

               
Cow position:
               
chr1:40192484-40192684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
16-228
               

               
Cow position:
               
chr1:53623175-53622969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
24, 84
               

               
Conread position:
               
16-229
               

               
Cow position:
               
chr1:30983273-30983480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 109
               

               
Conread position:
               
16-229
               

               
Cow position:
               
chr1:71789929-71790136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
16-232
               

               
Cow position:
               
chr1:76762397-76762176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
16-260
               

               
Cow position:
               
chr1:25021859-25022090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 84
               

               
Conread position:
               
17-140
               

               
Cow position:
               
chr1:99023787-99023914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
17-189
               

               
Cow position:
               
chr1:44814446-44814616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
152, 87
               

               
Conread position:
               
17-215
               

               
Cow position:
               
chr1:94712945-94713138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
17-219
               

               
Cow position:
               
chr1:79844697-79844488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
17-221
               

               
Cow position:
               
chr1:15875877-15875681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr1:186063-186255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr1:724957-724759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr1:25735086-25734887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr1:37726196-37726401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr1:56618438-56618631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr1:61885130-61884932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr1:81568811-81569009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr1:95558257-95558056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
17-224
               

               
Cow position:
               
chr1:73457876-73458081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
17-229
               

               
Cow position:
               
chr1:9437071-9437277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
17-229
               

               
Cow position:
               
chr1:21955154-21955361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
18-115
               

               
Cow position:
               
chr1:84128-84032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
18-115
               

               
Cow position:
               
chr1:25699231-25699133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
18-166
               

               
Cow position:
               
chr1:95809772-95809628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
18-188
               

               
Cow position:
               
chr1:48105208-48105382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
18-220
               

               
Cow position:
               
chr1:68844939-68845147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
18-220
               

               
Cow position:
               
chr1:85772221-85772031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
18-223
               

               
Cow position:
               
chr1:13828371-13828567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
151, 42
               

               
Conread position:
               
18-223
               

               
Cow position:
               
chr1:16961777-16961991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
18-223
               

               
Cow position:
               
chr1:95156748-95156945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
18-224
               

               
Cow position:
               
chr1:85162311-85162529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
18-229
               

               
Cow position:
               
chr1:87094996-87095202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
151, 24
               

               
Conread position:
               
18-236
               

               
Cow position:
               
chr1:33206657-33206873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 102
               

               
Conread position:
               
19-187
               

               
Cow position:
               
chr1:100152499-100152333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
151, 81
               

               
Conread position:
               
19-219
               

               
Cow position:
               
chr1:100513113-100512920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
19-220
               

               
Cow position:
               
chr1:816181-816387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
22, 190
               

               
Conread position:
               
19-221
               

               
Cow position:
               
chr1:69539901-69539712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr1:39683925-39684125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr1:64572730-64572534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr1:77232353-77232559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr1:78067834-78068050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr1:81481170-81481363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
150, 85
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr1:85712677-85712459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
19-228
               

               
Cow position:
               
chr1:99221126-99221342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
19-229
               

               
Cow position:
               
chr1:15547680-15547483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
205, 86
               

               
Conread position:
               
19-265
               

               
Cow position:
               
chr1:87149600-87149835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
20-110
               

               
Cow position:
               
chr1:80422846-80422755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
20-220
               

               
Cow position:
               
chr1:8834-8637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
20-221
               

               
Cow position:
               
chr1:29329761-29329562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
20-221
               

               
Cow position:
               
chr1:45555580-45555387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr1:48618032-48618225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr1:50585661-50585859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr1:102468408-102468598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
150, 37
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr1:102529638-102529838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
20-229
               

               
Cow position:
               
chr1:101280523-101280722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
149, 85
               

               
Conread position:
               
21-123
               

               
Cow position:
               
chr1:42179527-42179424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
21-186
               

               
Cow position:
               
chr1:95654199-95654363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
21-219
               

               
Cow position:
               
chr1:73719685-73719484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
21-221
               

               
Cow position:
               
chr1:60603356-60603556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
21-223
               

               
Cow position:
               
chr1:6790988-6790792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
21-223
               

               
Cow position:
               
chr1:50930766-50930957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
21-223
               

               
Cow position:
               
chr1:94823175-94823373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
21-223
               

               
Cow position:
               
chr1:96272803-96273004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
21-229
               

               
Cow position:
               
chr1:43352439-43352644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
21-246
               

               
Cow position:
               
chr1:63461092-63460874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
22-168
               

               
Cow position:
               
chr1:100399994-100400129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
22-187
               

               
Cow position:
               
chr1:29971327-29971487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
147, 19
               

               
Conread position:
               
22-187
               

               
Cow position:
               
chr1:74304866-74305027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
22-203
               

               
Cow position:
               
chr1:92197667-92197492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
22-221
               

               
Cow position:
               
chr1:63530771-63530579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
147, 82
               

               
Conread position:
               
22-223
               

               
Cow position:
               
chr1:47966807-47967004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
22-223
               

               
Cow position:
               
chr1:57575551-57575745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
22-229
               

               
Cow position:
               
chr1:52496981-52496783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
22-229
               

               
Cow position:
               
chr1:87072907-87072709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
22-236
               

               
Cow position:
               
chr1:48443978-48444188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
22-241
               

               
Cow position:
               
chr1:1605918-1606133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
22-254
               

               
Cow position:
               
chr1:6398292-6398528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
52, 174
               

               
Conread position:
               
23-123
               

               
Cow position:
               
chr1:77892379-77892278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
23-219
               

               
Cow position:
               
chr1:55194018-55194223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
23-219
               

               
Cow position:
               
chr1:100800557-100800746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
23-223
               

               
Cow position:
               
chr1:19599149-19599342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
146, 76
               

               
Conread position:
               
23-229
               

               
Cow position:
               
chr1:76470869-76470665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 150
               

               
Conread position:
               
23-234
               

               
Cow position:
               
chr1:4391056-4391262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
24-122
               

               
Cow position:
               
chr1:56672277-56672377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
24-168
               

               
Cow position:
               
chr1:61560285-61560424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
24-194
               

               
Cow position:
               
chr1:54645634-54645475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
24-219
               

               
Cow position:
               
chr1:66752421-66752606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
24-221
               

               
Cow position:
               
chr1:874874-874675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
24-221
               

               
Cow position:
               
chr1:38277815-38278007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
24-223
               

               
Cow position:
               
chr1:79164871-79165063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 130
               

               
Conread position:
               
24-256
               

               
Cow position:
               
chr1:84595102-84594874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
25-182
               

               
Cow position:
               
chr1:51654883-51654708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
25-208
               

               
Cow position:
               
chr1:71664684-71664863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
25-210
               

               
Cow position:
               
chr1:42404359-42404167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
25-217
               

               
Cow position:
               
chr1:72356578-72356381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 110
               

               
Conread position:
               
25-220
               

               
Cow position:
               
chr1:71253324-71253531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
16, 189
               

               
Conread position:
               
25-220
               

               
Cow position:
               
chr1:78066333-78066515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
25-220
               

               
Cow position:
               
chr1:78811248-78811060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
25-221
               

               
Cow position:
               
chr1:64458182-64457986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
25-221
               

               
Cow position:
               
chr1:65318787-65318596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
25-223
               

               
Cow position:
               
chr1:34771289-34771484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
25-223
               

               
Cow position:
               
chr1:73721574-73721379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
25-223
               

               
Cow position:
               
chr1:100474449-100474253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
25-223
               

               
Cow position:
               
chr1:102648490-102648297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
25-229
               

               
Cow position:
               
chr1:29626701-29626900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
115, 71
               

               
Conread position:
               
25-229
               

               
Cow position:
               
chr1:64329142-64328931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
25-234
               

               
Cow position:
               
chr1:45873836-45874061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 197
               

               
Conread position:
               
26-168
               

               
Cow position:
               
chr1:8134134-8134000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
26-199
               

               
Cow position:
               
chr1:101822295-101822470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
26-216
               

               
Cow position:
               
chr1:98742225-98742048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
26-218
               

               
Cow position:
               
chr1:5597003-5597188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
26-219
               

               
Cow position:
               
chr1:731764-731950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
26-220
               

               
Cow position:
               
chr1:49824856-49825042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
26-220
               

               
Cow position:
               
chr1:90621297-90621484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
26-222
               

               
Cow position:
               
chr1:5872565-5872759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
15, 96
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr1:49980917-49980729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
26-229
               

               
Cow position:
               
chr1:49433052-49433252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
26-234
               

               
Cow position:
               
chr1:3815471-3815678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
27-149
               

               
Cow position:
               
chr1:43703788-43703664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
27-210
               

               
Cow position:
               
chr1:56749023-56748844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
27-220
               

               
Cow position:
               
chr1:48213937-48214133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
14, 174
               

               
Conread position:
               
27-220
               

               
Cow position:
               
chr1:55753011-55753194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
27-220
               

               
Cow position:
               
chr1:83072648-83072463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr1:30189365-30189172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr1:37917971-37918170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr1:45315423-45315617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr1:73551294-73551491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr1:84811733-84811920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr1:96558639-96558830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
142, 77
               

               
Conread position:
               
27-228
               

               
Cow position:
               
chr1:68763476-68763671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
27-231
               

               
Cow position:
               
chr1:3417585-3417365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
27-235
               

               
Cow position:
               
chr1:54258774-54258573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
27-236
               

               
Cow position:
               
chr1:76657843-76658062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
28-182
               

               
Cow position:
               
chr1:15103091-15102943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
28-220
               

               
Cow position:
               
chr1:42775113-42774932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
28-221
               

               
Cow position:
               
chr1:22192977-22192790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
28-222
               

               
Cow position:
               
chr1:27145437-27145631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 105
               

               
Conread position:
               
28-223
               

               
Cow position:
               
chr1:7453121-7452932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
28-223
               

               
Cow position:
               
chr1:25383876-25383687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
28-223
               

               
Cow position:
               
chr1:57089472-57089660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
28-229
               

               
Cow position:
               
chr1:65639130-65638924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 120
               

               
Conread position:
               
28-229
               

               
Cow position:
               
chr1:102768382-102768191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
28-255
               

               
Cow position:
               
chr1:23180313-23180082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
29-152
               

               
Cow position:
               
chr1:6787936-6788056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
29-156
               

               
Cow position:
               
chr1:43144544-43144420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
29-159
               

               
Cow position:
               
chr1:95101157-95101024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
29-168
               

               
Cow position:
               
chr1:33080605-33080735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
29-187
               

               
Cow position:
               
chr1:90192626-90192471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
29-220
               

               
Cow position:
               
chr1:41056886-41056700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
29-220
               

               
Cow position:
               
chr1:52912686-52912875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
29-221
               

               
Cow position:
               
chr1:90267930-90267741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
29-221
               

               
Cow position:
               
chr1:96518908-96518714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
29-223
               

               
Cow position:
               
chr1:88360091-88359897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
29-224
               

               
Cow position:
               
chr1:68126984-68127172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr1:98422209-98422012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 86
               

               
Conread position:
               
29-259
               

               
Cow position:
               
chr1:74919769-74919992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 88
               

               
Conread position:
               
30-168
               

               
Cow position:
               
chr1:61564986-61564855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
30-215
               

               
Cow position:
               
chr1:70292008-70291814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
30-216
               

               
Cow position:
               
chr1:7966052-7965872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
30-219
               

               
Cow position:
               
chr1:74832633-74832445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
30-221
               

               
Cow position:
               
chr1:26934063-26934251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr1:77685773-77685962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr1:82513147-82513334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr1:87198033-87197839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 84
               

               
Conread position:
               
30-224
               

               
Cow position:
               
chr1:57088056-57087866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
30-228
               

               
Cow position:
               
chr1:55110707-55110507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
30-229
               

               
Cow position:
               
chr1:71350519-71350715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
30-229
               

               
Cow position:
               
chr1:79719013-79718818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
30-231
               

               
Cow position:
               
chr1:58186973-58186763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 185
               

               
Conread position:
               
30-232
               

               
Cow position:
               
chr1:4361847-4362047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
30-243
               

               
Cow position:
               
chr1:69678118-69678319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
31-210
               

               
Cow position:
               
chr1:60045191-60045017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
31-220
               

               
Cow position:
               
chr1:19384253-19384436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
31-223
               

               
Cow position:
               
chr1:62964472-62964285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
31-223
               

               
Cow position:
               
chr1:81858697-81858882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
32-218
               

               
Cow position:
               
chr1:60987194-60987013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
138, 72
               

               
Conread position:
               
32-222
               

               
Cow position:
               
chr1:68710487-68710298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr1:8670991-8670792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr1:29671017-29671205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr1:67291362-67291171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 174
               

               
Conread position:
               
32-229
               

               
Cow position:
               
chr1:78029823-78030020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
33-219
               

               
Cow position:
               
chr1:77404702-77404887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
137, 79
               

               
Conread position:
               
34-221
               

               
Cow position:
               
chr1:20125996-20125813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 63
               

               
Conread position:
               
34-223
               

               
Cow position:
               
chr1:759211-759399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 73
               

               
Conread position:
               
34-223
               

               
Cow position:
               
chr1:43872108-43872300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
7, 157
               

               
Conread position:
               
34-223
               

               
Cow position:
               
chr1:89449099-89448919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 54
               

               
Conread position:
               
35-223
               

               
Cow position:
               
chr1:6381975-6381791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
36-222
               

               
Cow position:
               
chr1:17196427-17196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 70
               

               
Conread position:
               
38-218
               

               
Cow position:
               
chr1:82884180-82884369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
38-221
               

               
Cow position:
               
chr1:40181425-40181604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
38-223
               

               
Cow position:
               
chr1:95618837-95618661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
39-220
               

               
Cow position:
               
chr1:78034710-78034882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
40-186
               

               
Cow position:
               
chr1:55357095-55357239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
130, 65
               

               
Conread position:
               
40-220
               

               
Cow position:
               
chr1:23633733-23633908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
40-221
               

               
Cow position:
               
chr1:49082940-49082764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
129, 65
               

               
Conread position:
               
40-223
               

               
Cow position:
               
chr1:95072537-95072351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
40-224
               

               
Cow position:
               
chr1:98512131-98511945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
41-220
               

               
Cow position:
               
chr1:31855036-31855225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
41-221
               

               
Cow position:
               
chr1:81668619-81668796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
128, 72
               

               
Conread position:
               
41-233
               

               
Cow position:
               
chr1:61134608-61134422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
129, 55
               

               
Conread position:
               
41-235
               

               
Cow position:
               
chr1:72813810-72813622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
129, 36
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr1:34856432-34856623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
129, 64
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr1:23373052-23372881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
43-222
               

               
Cow position:
               
chr1:101525729-101525905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
43-223
               

               
Cow position:
               
chr1:33775448-33775624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
157, 24
               

               
Conread position:
               
43-228
               

               
Cow position:
               
chr1:48730617-48730818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
43-260
               

               
Cow position:
               
chr1:1802361-1802153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
48-220
               

               
Cow position:
               
chr1:31630097-31630265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
48-229
               

               
Cow position:
               
chr1:6031814-6031636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
48-229
               

               
Cow position:
               
chr1:36613058-36613248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
68-218
               

               
Cow position:
               
chr1:45553067-45553216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
69-223
               

               
Cow position:
               
chr1:83606282-83606431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
70-252
               

               
Cow position:
               
chr1:73494427-73494607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
71-221
               

               
Cow position:
               
chr1:67539725-67539580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
84-252
               

               
Cow position:
               
chr1:69185566-69185738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
35, 122
               

               
Conread position:
               
95-223
               

               
Cow position:
               
chr1:65909660-65909530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
95-223
               

               
Cow position:
               
chr1:81580327-81580197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
74, 103
               

               
Conread position:
               
95-223
               

               
Cow position:
               
chr1:98576197-98576066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
99-223
               

               
Cow position:
               
chr1:46100694-46100821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
101-219
               

               
Cow position:
               
chr1:95974543-95974423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
102-223
               

               
Cow position:
               
chr1:31272301-31272423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
106-223
               

               
Cow position:
               
chr1:47233339-47233459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
106-229
               

               
Cow position:
               
chr1:64019382-64019509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
107-223
               

               
Cow position:
               
chr1:84768741-84768860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
110-223
               

               
Cow position:
               
chr1:54157431-54157315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
113-223
               

               
Cow position:
               
chr1:91874785-91874893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
114-220
               

               
Cow position:
               
chr1:7023252-7023143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
114-223
               

               
Cow position:
               
chr1:63079138-63079029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 78
               

               
Conread position:
               
114-223
               

               
Cow position:
               
chr1:73960831-73960722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
117-222
               

               
Cow position:
               
chr1:53640840-53640735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
52, 75
               

               
Conread position:
               
119-224
               

               
Cow position:
               
chr1:30417922-30418030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               
Show alignments to all cow chromosomes.