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Cow genome map

           
Conread name:
           
rmed21c_p2.y1
        

               
Conread position:
               
1-148
               

               
Cow position:
               
chr28:4536744-4536592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr28:7350883-7350672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr28:3725975-3726197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr28:32203357-32203129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 58
               

               
Conread position:
               
2-113
               

               
Cow position:
               
chr28:10528726-10528838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-199
               

               
Cow position:
               
chr28:6301316-6301123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr28:9705888-9705675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr28:24966617-24966407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
152, 101
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr28:2743347-2743099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr28:5236106-5235899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr28:10495068-10495279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr28:15362810-15362597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr28:26826453-26826231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
168, 102
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr28:19127940-19128158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 104
               

               
Conread position:
               
3-133
               

               
Cow position:
               
chr28:16159639-16159773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr28:3137784-3137563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 117
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr28:10615719-10615928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr28:117527-117752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr28:18847792-18847561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr28:29500638-29500399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr28:34830385-34830129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
4-103
               

               
Cow position:
               
chr28:11059721-11059621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-123
               

               
Cow position:
               
chr28:3396905-3397025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chr28:16964734-16964887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr28:3257221-3257047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 103
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr28:3310990-3311168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr28:7437247-7437431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr28:8936378-8936177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 124
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chr28:26982506-26982715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr28:2892486-2892274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 113
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr28:13245794-13245581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr28:3011037-3011250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr28:8347964-8347750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 113
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr28:11743597-11743801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 66
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr28:26820046-26820266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr28:2077731-2077512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
5-171
               

               
Cow position:
               
chr28:1838225-1838057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr28:22332758-22332552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr28:11079529-11079323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr28:751457-751245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr28:4022900-4022691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 58
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr28:20174067-20173857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr28:1632422-1632646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr28:9812512-9812290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
36, 153
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chr28:11798547-11798769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
6-222
               

               
Cow position:
               
chr28:13356138-13356353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr28:7697751-7697960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
37, 109
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr28:11866440-11866647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr28:32015013-32014802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr28:17948889-17949096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr28:34877745-34877937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
7-220
               

               
Cow position:
               
chr28:4873097-4873324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
32, 211
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr28:4937012-4937224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr28:17620132-17620347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
8-168
               

               
Cow position:
               
chr28:21118906-21118753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 97
               

               
Conread position:
               
8-221
               

               
Cow position:
               
chr28:3484812-3484600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr28:5144288-5144503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr28:5630325-5630116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr28:9100154-9099954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
8-225
               

               
Cow position:
               
chr28:3678585-3678379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
8-229
               

               
Cow position:
               
chr28:8827390-8827176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
8-229
               

               
Cow position:
               
chr28:11398568-11398786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
8-229
               

               
Cow position:
               
chr28:13048059-13048272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 41
               

               
Conread position:
               
8-244
               

               
Cow position:
               
chr28:16243371-16243617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 138
               

               
Conread position:
               
8-254
               

               
Cow position:
               
chr28:4163354-4163596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
9-128
               

               
Cow position:
               
chr28:22170057-22170175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
9-221
               

               
Cow position:
               
chr28:5674097-5673895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr28:19038793-19039000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr28:659063-659277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
161, 83
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr28:3449534-3449321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
32, 103
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr28:34230456-34230246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
10-221
               

               
Cow position:
               
chr28:5152839-5152621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 57
               

               
Conread position:
               
10-222
               

               
Cow position:
               
chr28:4307669-4307878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 94
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chr28:2825645-2825437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chr28:3424001-3423795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chr28:4823825-4823622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
10-229
               

               
Cow position:
               
chr28:6358186-6358403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
10-229
               

               
Cow position:
               
chr28:11307294-11307507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 57
               

               
Conread position:
               
11-123
               

               
Cow position:
               
chr28:19079575-19079688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
11-136
               

               
Cow position:
               
chr28:508191-508065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
11-220
               

               
Cow position:
               
chr28:12964805-12964591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 186
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr28:16204107-16204316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr28:20125004-20124802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
11-229
               

               
Cow position:
               
chr28:6563671-6563887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chr28:5200050-5199836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
11-255
               

               
Cow position:
               
chr28:18761785-18762014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
11-256
               

               
Cow position:
               
chr28:14242919-14242678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 83
               

               
Conread position:
               
12-136
               

               
Cow position:
               
chr28:19025718-19025843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
12-221
               

               
Cow position:
               
chr28:118836-118629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
12-222
               

               
Cow position:
               
chr28:21103598-21103806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
12-223
               

               
Cow position:
               
chr28:4159186-4158973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
12-223
               

               
Cow position:
               
chr28:6059249-6059452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
12-223
               

               
Cow position:
               
chr28:9418726-9418948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
12-223
               

               
Cow position:
               
chr28:26530646-26530848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
156, 93
               

               
Conread position:
               
12-229
               

               
Cow position:
               
chr28:7644963-7644751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
160, 25
               

               
Conread position:
               
12-231
               

               
Cow position:
               
chr28:7964456-7964666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
12-255
               

               
Cow position:
               
chr28:18770309-18770070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
13-177
               

               
Cow position:
               
chr28:5294781-5294937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr28:11115330-11115129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
13-220
               

               
Cow position:
               
chr28:4884032-4884235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
13-220
               

               
Cow position:
               
chr28:21845172-21844978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr28:777897-777693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr28:17680846-17680640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
13-236
               

               
Cow position:
               
chr28:29988887-29989105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
14-144
               

               
Cow position:
               
chr28:27787784-27787651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
14-199
               

               
Cow position:
               
chr28:16200520-16200701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
27, 92
               

               
Conread position:
               
14-223
               

               
Cow position:
               
chr28:11828739-11828941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
14-236
               

               
Cow position:
               
chr28:5552490-5552710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
156, 23
               

               
Conread position:
               
15-185
               

               
Cow position:
               
chr28:14657935-14657769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
15-207
               

               
Cow position:
               
chr28:17740044-17739856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr28:11827907-11827706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
16-187
               

               
Cow position:
               
chr28:4077119-4077292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr28:8396543-8396353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr28:19024668-19024451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
23, 203
               

               
Conread position:
               
16-249
               

               
Cow position:
               
chr28:10480588-10480823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
154, 23
               

               
Conread position:
               
17-221
               

               
Cow position:
               
chr28:5193540-5193351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr28:2821478-2821271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chr28:13370922-13371131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
17-236
               

               
Cow position:
               
chr28:21008454-21008660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
18-185
               

               
Cow position:
               
chr28:8384088-8383917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
18-199
               

               
Cow position:
               
chr28:3759213-3759032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
18-220
               

               
Cow position:
               
chr28:4071174-4070990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
19-220
               

               
Cow position:
               
chr28:7557512-7557713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr28:4643555-4643752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr28:4881034-4881222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
19-223
               

               
Cow position:
               
chr28:20759478-20759683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
19-234
               

               
Cow position:
               
chr28:10959014-10958808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
20-220
               

               
Cow position:
               
chr28:5436872-5437064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
20-221
               

               
Cow position:
               
chr28:8898267-8898064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
149, 126
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr28:9109425-9109234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr28:11527045-11527240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr28:17357810-17358016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 128
               

               
Conread position:
               
20-228
               

               
Cow position:
               
chr28:4006995-4006796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
20-231
               

               
Cow position:
               
chr28:5577746-5577541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
20-246
               

               
Cow position:
               
chr28:26960699-26960915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
21-168
               

               
Cow position:
               
chr28:22278412-22278556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
21-217
               

               
Cow position:
               
chr28:4870584-4870781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
149, 96
               

               
Conread position:
               
21-220
               

               
Cow position:
               
chr28:24082483-24082291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
21-223
               

               
Cow position:
               
chr28:10978051-10977859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
22-202
               

               
Cow position:
               
chr28:17737938-17738114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
22-216
               

               
Cow position:
               
chr28:32179911-32179718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
22-223
               

               
Cow position:
               
chr28:8787751-8787558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
23-197
               

               
Cow position:
               
chr28:11309883-11310056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
23-220
               

               
Cow position:
               
chr28:5609707-5609896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
23-223
               

               
Cow position:
               
chr28:24707110-24706915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
23-229
               

               
Cow position:
               
chr28:7008770-7008967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
24-183
               

               
Cow position:
               
chr28:5724930-5725090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
24-223
               

               
Cow position:
               
chr28:4013293-4013102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
24-223
               

               
Cow position:
               
chr28:4182211-4182019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
24-251
               

               
Cow position:
               
chr28:5867950-5867709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 39
               

               
Conread position:
               
25-219
               

               
Cow position:
               
chr28:5245566-5245378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
25-223
               

               
Cow position:
               
chr28:8259841-8259646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
26-174
               

               
Cow position:
               
chr28:28696674-28696525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
26-199
               

               
Cow position:
               
chr28:28501450-28501273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
26-221
               

               
Cow position:
               
chr28:2752268-2752474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr28:7371902-7372104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr28:7618952-7619132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr28:27161108-27161308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
27-221
               

               
Cow position:
               
chr28:29434200-29434408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr28:11346282-11346469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
27-229
               

               
Cow position:
               
chr28:13527405-13527205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
28-184
               

               
Cow position:
               
chr28:133874-134029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
28-218
               

               
Cow position:
               
chr28:7532365-7532566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
28-222
               

               
Cow position:
               
chr28:5232146-5231957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
28-222
               

               
Cow position:
               
chr28:22085340-22085523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 77
               

               
Conread position:
               
28-223
               

               
Cow position:
               
chr28:3410783-3410969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
29-168
               

               
Cow position:
               
chr28:8165008-8165140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
29-221
               

               
Cow position:
               
chr28:5236390-5236584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
29-222
               

               
Cow position:
               
chr28:6322023-6321836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 61
               

               
Conread position:
               
29-223
               

               
Cow position:
               
chr28:4282284-4282472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
29-223
               

               
Cow position:
               
chr28:24996413-24996595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
30-222
               

               
Cow position:
               
chr28:4074180-4073988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 75
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr28:9636253-9636439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr28:19262380-19262569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr28:21868661-21868475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
30-231
               

               
Cow position:
               
chr28:6934972-6935169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
31-206
               

               
Cow position:
               
chr28:26867951-26868116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
31-220
               

               
Cow position:
               
chr28:3746400-3746223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
31-223
               

               
Cow position:
               
chr28:12430808-12430624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
139, 14
               

               
Conread position:
               
32-199
               

               
Cow position:
               
chr28:2435836-2435990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
137, 47
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr28:19994744-19994928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
32-229
               

               
Cow position:
               
chr28:8716178-8716376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
34-220
               

               
Cow position:
               
chr28:25806797-25806594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
34-237
               

               
Cow position:
               
chr28:20968376-20968576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
35-168
               

               
Cow position:
               
chr28:22182934-22183065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
6, 78
               

               
Conread position:
               
39-208
               

               
Cow position:
               
chr28:657270-657443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
40-223
               

               
Cow position:
               
chr28:4046037-4045865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
129, 57
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr28:3264248-3264085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
41-220
               

               
Cow position:
               
chr28:18608173-18608347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
127, 64
               

               
Conread position:
               
41-223
               

               
Cow position:
               
chr28:20013644-20013453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
41-258
               

               
Cow position:
               
chr28:26269591-26269371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 175
               

               
Conread position:
               
42-219
               

               
Cow position:
               
chr28:26743822-26743648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
127, 70
               

               
Conread position:
               
43-223
               

               
Cow position:
               
chr28:20397176-20397352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
53-229
               

               
Cow position:
               
chr28:19221963-19222140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 40
               

               
Conread position:
               
58-223
               

               
Cow position:
               
chr28:2899173-2899007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
113, 47
               

               
Conread position:
               
73-217
               

               
Cow position:
               
chr28:25400036-25399896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
73-223
               

               
Cow position:
               
chr28:7541704-7541858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
89-223
               

               
Cow position:
               
chr28:2772866-2772729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
95-220
               

               
Cow position:
               
chr28:6971197-6971327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
95-223
               

               
Cow position:
               
chr28:25677191-25677324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
95-249
               

               
Cow position:
               
chr28:12385145-12385302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
97-224
               

               
Cow position:
               
chr28:7498000-7498130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
105-223
               

               
Cow position:
               
chr28:2131785-2131906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
107-223
               

               
Cow position:
               
chr28:5204332-5204213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
113-236
               

               
Cow position:
               
chr28:8681299-8681421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 95
               
Show alignments to all cow chromosomes.