Cow genome map
| Conread name: | rmed34c_a10.y1 |
| Conread position: | 40-188 |
| Cow position: | chr11:52832545-52832695 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 41-187 |
| Cow position: | chr11:69402071-69402221 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 41-188 |
| Cow position: | chr11:77008216-77008067 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 43-184 |
| Cow position: | chr11:33191443-33191591 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 46-185 |
| Cow position: | chr11:30211081-30210933 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 46-188 |
| Cow position: | chr11:32438777-32438925 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 47-182 |
| Cow position: | chr11:76851663-76851805 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 47-188 |
| Cow position: | chr11:22009214-22009361 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 47-188 |
| Cow position: | chr11:40275427-40275575 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 47-188 |
| Cow position: | chr11:40278919-40279067 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 48-187 |
| Cow position: | chr11:6729838-6729695 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 48-187 |
| Cow position: | chr11:62215019-62215165 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 48-188 |
| Cow position: | chr11:21136987-21136840 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 48-188 |
| Cow position: | chr11:34136674-34136528 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 48-188 |
| Cow position: | chr11:54058164-54058017 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 48-209 |
| Cow position: | chr11:26468315-26468150 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 49-188 |
| Cow position: | chr11:54244845-54244700 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 49-204 |
| Cow position: | chr11:18913331-18913179 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 50-188 |
| Cow position: | chr11:34642065-34642207 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 50-204 |
| Cow position: | chr11:13121847-13122005 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 52-188 |
| Cow position: | chr11:40269429-40269569 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 52-188 |
| Cow position: | chr11:42519901-42519760 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 104 |
| Conread position: | 53-188 |
| Cow position: | chr11:7001761-7001904 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 53-188 |
| Cow position: | chr11:19502136-19501995 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 124 |
| Conread position: | 53-188 |
| Cow position: | chr11:60985114-60985251 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 53-189 |
| Cow position: | chr11:67236563-67236425 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 53-211 |
| Cow position: | chr11:53445938-53445776 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 54-188 |
| Cow position: | chr11:8828465-8828606 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 54-188 |
| Cow position: | chr11:20491731-20491595 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 123 |
| Conread position: | 54-188 |
| Cow position: | chr11:63508578-63508440 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 103 |
| Conread position: | 54-189 |
| Cow position: | chr11:31422893-31422756 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 54-230 |
| Cow position: | chr11:14308797-14308619 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 55-187 |
| Cow position: | chr11:75255566-75255432 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 55-188 |
| Cow position: | chr11:51745509-51745375 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 56-188 |
| Cow position: | chr11:372979-373118 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 57-188 |
| Cow position: | chr11:5188290-5188155 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 34, 73 |
| Conread position: | 60-204 |
| Cow position: | chr11:45553914-45553766 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 80-187 |
| Cow position: | chr11:27681637-27681528 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 80-187 |
| Cow position: | chr11:49218211-49218321 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 80-187 |
| Cow position: | chr11:50951691-50951584 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 84-185 |
| Cow position: | chr11:76007511-76007408 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 84-188 |
| Cow position: | chr11:696216-696322 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 84-188 |
| Cow position: | chr11:7684089-7683984 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 85 |
| Conread position: | 84-188 |
| Cow position: | chr11:11785465-11785358 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 84-188 |
| Cow position: | chr11:14941478-14941584 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 84-188 |
| Cow position: | chr11:47193646-47193540 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 84-188 |
| Cow position: | chr11:50953431-50953537 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.