Cow genome map
| Conread name: | rmed34c_a10.y1 |
| Conread position: | 3-178 |
| Cow position: | chr3:51492993-51492814 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 32-188 |
| Cow position: | chr3:55991688-55991849 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 33-188 |
| Cow position: | chr3:30839424-30839262 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 34-217 |
| Cow position: | chr3:11919862-11920045 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 43-187 |
| Cow position: | chr3:36101000-36100858 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 43-188 |
| Cow position: | chr3:53588218-53588364 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 46-187 |
| Cow position: | chr3:38253236-38253096 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 46-188 |
| Cow position: | chr3:41718559-41718411 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 46-188 |
| Cow position: | chr3:48211672-48211530 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 91 |
| Conread position: | 47-188 |
| Cow position: | chr3:50281585-50281733 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 48-176 |
| Cow position: | chr3:76913182-76913045 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 83 |
| Conread position: | 48-180 |
| Cow position: | chr3:54126093-54126229 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 48-187 |
| Cow position: | chr3:43591062-43590915 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 48-188 |
| Cow position: | chr3:5419702-5419844 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 48-188 |
| Cow position: | chr3:25076001-25076147 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 48-188 |
| Cow position: | chr3:51146511-51146651 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 49-186 |
| Cow position: | chr3:17633880-17634021 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 49-188 |
| Cow position: | chr3:15221353-15221498 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 49-188 |
| Cow position: | chr3:37485636-37485778 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 50-188 |
| Cow position: | chr3:41550211-41550355 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 101 |
| Conread position: | 52-188 |
| Cow position: | chr3:15654988-15655127 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 52-188 |
| Cow position: | chr3:26740878-26741012 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 52-188 |
| Cow position: | chr3:31247823-31247685 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 52-188 |
| Cow position: | chr3:33797841-33797699 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 53-188 |
| Cow position: | chr3:27532500-27532635 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 53-188 |
| Cow position: | chr3:62798627-62798765 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 53-217 |
| Cow position: | chr3:75142427-75142590 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 135 |
| Conread position: | 54-186 |
| Cow position: | chr3:8746074-8746210 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 54-188 |
| Cow position: | chr3:5601008-5601147 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 54-188 |
| Cow position: | chr3:9074185-9074326 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 54-188 |
| Cow position: | chr3:13909644-13909517 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 55-179 |
| Cow position: | chr3:44838412-44838287 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 56-186 |
| Cow position: | chr3:12255630-12255500 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 56-188 |
| Cow position: | chr3:23111356-23111493 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 56-188 |
| Cow position: | chr3:57829926-57830061 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 56-188 |
| Cow position: | chr3:58447909-58448045 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 56-188 |
| Cow position: | chr3:59608655-59608522 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 57-187 |
| Cow position: | chr3:18213981-18214115 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 62-182 |
| Cow position: | chr3:36204697-36204578 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 62-188 |
| Cow position: | chr3:54340270-54340402 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 63-188 |
| Cow position: | chr3:56693377-56693253 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 45 |
| Conread position: | 63-188 |
| Cow position: | chr3:61322988-61322860 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 69-188 |
| Cow position: | chr3:8457792-8457674 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 71-187 |
| Cow position: | chr3:34085915-34086034 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 76-189 |
| Cow position: | chr3:48629455-48629570 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 77-188 |
| Cow position: | chr3:46094955-46094842 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 80-185 |
| Cow position: | chr3:14505785-14505892 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 80-188 |
| Cow position: | chr3:73436311-73436421 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 83-188 |
| Cow position: | chr3:24300487-24300380 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 84-186 |
| Cow position: | chr3:18865907-18866011 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 84-188 |
| Cow position: | chr3:61116727-61116834 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 84-188 |
| Cow position: | chr3:68262888-68262784 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 84-188 |
| Cow position: | chr3:74912979-74912873 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 85-188 |
| Cow position: | chr3:66707945-66708047 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 86-188 |
| Cow position: | chr3:20471243-20471345 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.