Cow genome map
| Conread name: | rmed34c_a10.y1 |
| Conread position: | 41-188 |
| Cow position: | chr5:18695379-18695229 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 41-188 |
| Cow position: | chr5:21530886-21531036 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 42-165 |
| Cow position: | chr5:32269962-32269838 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 43-188 |
| Cow position: | chr5:39695873-39695721 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 43-209 |
| Cow position: | chr5:42049901-42049730 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 44-188 |
| Cow position: | chr5:21194899-21195053 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 45-188 |
| Cow position: | chr5:36027934-36028075 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 46-188 |
| Cow position: | chr5:41604840-41604693 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 46-188 |
| Cow position: | chr5:50425269-50425417 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 47-188 |
| Cow position: | chr5:28945842-28945991 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 47-188 |
| Cow position: | chr5:39134042-39134191 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 48-171 |
| Cow position: | chr5:10450447-10450322 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 48-182 |
| Cow position: | chr5:55411827-55411966 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 48-186 |
| Cow position: | chr5:23527411-23527560 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 48-186 |
| Cow position: | chr5:66190201-66190057 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 125 |
| Conread position: | 48-188 |
| Cow position: | chr5:3059134-3058989 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 48-188 |
| Cow position: | chr5:34914340-34914483 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 49-204 |
| Cow position: | chr5:27293454-27293616 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 50-188 |
| Cow position: | chr5:17028308-17028164 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 50-188 |
| Cow position: | chr5:46610883-46611029 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 50-188 |
| Cow position: | chr5:67149803-67149948 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 51-183 |
| Cow position: | chr5:36825528-36825395 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 52-187 |
| Cow position: | chr5:41605604-41605741 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 52-188 |
| Cow position: | chr5:58344071-58343928 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 52-188 |
| Cow position: | chr5:75687118-75687255 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 53-188 |
| Cow position: | chr5:54090244-54090105 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 54-188 |
| Cow position: | chr5:23366558-23366695 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 54-189 |
| Cow position: | chr5:39753446-39753586 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 55-181 |
| Cow position: | chr5:25899666-25899797 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 55-186 |
| Cow position: | chr5:39442506-39442369 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 55-188 |
| Cow position: | chr5:5929669-5929528 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 55-188 |
| Cow position: | chr5:27411196-27411332 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 55-188 |
| Cow position: | chr5:33340937-33341067 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 55-188 |
| Cow position: | chr5:33342665-33342795 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 55-188 |
| Cow position: | chr5:33697344-33697479 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 55-188 |
| Cow position: | chr5:51503202-51503073 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 56-188 |
| Cow position: | chr5:29844489-29844349 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 56-188 |
| Cow position: | chr5:42782520-42782655 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 56-188 |
| Cow position: | chr5:45938348-45938480 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 56-188 |
| Cow position: | chr5:58748976-58748839 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 58-182 |
| Cow position: | chr5:51048821-51048695 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 59-182 |
| Cow position: | chr5:21356686-21356813 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 63-188 |
| Cow position: | chr5:63328698-63328823 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 76-187 |
| Cow position: | chr5:6987634-6987520 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 76-188 |
| Cow position: | chr5:23536364-23536249 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 79-188 |
| Cow position: | chr5:18554073-18553966 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 89 |
| Conread position: | 84-188 |
| Cow position: | chr5:47680841-47680948 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 85-209 |
| Cow position: | chr5:7432984-7433114 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.