Cow genome map
| Conread name: | rmga09_j8.y1 |
| Conread position: | 1-303 |
| Cow position: | chr2:36998005-36997684 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1-304 |
| Cow position: | chr2:32454831-32455137 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 1-304 |
| Cow position: | chr2:70579864-70580157 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 0 |
| Conread position: | 1-307 |
| Cow position: | chr2:38376739-38376438 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 88, 212 |
| Conread position: | 1-307 |
| Cow position: | chr2:39263337-39263040 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 94, 69 |
| Conread position: | 1-307 |
| Cow position: | chr2:39855638-39855340 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 1-307 |
| Cow position: | chr2:42599777-42599461 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 96, 85 |
| Conread position: | 1-307 |
| Cow position: | chr2:62226029-62225735 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 50 |
| Conread position: | 1-307 |
| Cow position: | chr2:62818868-62819161 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 131, 73 |
| Conread position: | 1-310 |
| Cow position: | chr2:85067275-85067588 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 75 |
| Conread position: | 1-312 |
| Cow position: | chr2:32243938-32244238 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 1-325 |
| Cow position: | chr2:58273247-58273563 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 92, 17 |
| Conread position: | 1-332 |
| Cow position: | chr2:40691336-40691012 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 2-307 |
| Cow position: | chr2:51414764-51414469 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 3-303 |
| Cow position: | chr2:60947582-60947303 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-304 |
| Cow position: | chr2:21211387-21211084 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 52, 243 |
| Conread position: | 3-307 |
| Cow position: | chr2:4796614-4796314 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 3-307 |
| Cow position: | chr2:76822403-76822712 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 237 |
| Conread position: | 4-307 |
| Cow position: | chr2:45680548-45680253 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 107, 97 |
| Conread position: | 4-324 |
| Cow position: | chr2:56797394-56797698 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 7-307 |
| Cow position: | chr2:29268904-29268597 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 11-295 |
| Cow position: | chr2:18071580-18071303 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 98, 90 |
| Conread position: | 11-295 |
| Cow position: | chr2:23014638-23014926 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 11-307 |
| Cow position: | chr2:23271091-23271378 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 14-302 |
| Cow position: | chr2:42692389-42692097 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 88, 141 |
| Conread position: | 14-307 |
| Cow position: | chr2:9408170-9407879 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 74, 220 |
| Conread position: | 17-307 |
| Cow position: | chr2:76298915-76298631 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 214 |
| Conread position: | 17-307 |
| Cow position: | chr2:80160432-80160709 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 93, 6 |
| Conread position: | 19-307 |
| Cow position: | chr2:31499832-31499551 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 83, 217 |
| Conread position: | 19-325 |
| Cow position: | chr2:21416144-21415849 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 165 |
| Conread position: | 37-295 |
| Cow position: | chr2:30352478-30352727 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 39-307 |
| Cow position: | chr2:11235034-11235292 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 80, 59 |
| Conread position: | 65-307 |
| Cow position: | chr2:19502564-19502798 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 37 |
| Conread position: | 95-307 |
| Cow position: | chr2:32489940-32490144 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 141 |
| Conread position: | 98-304 |
| Cow position: | chr2:38344227-38344033 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 98-307 |
| Cow position: | chr2:22035322-22035127 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 109-299 |
| Cow position: | chr2:73998849-73998656 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 10, 125 |
| Conread position: | 109-307 |
| Cow position: | chr2:29802395-29802578 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 110-298 |
| Cow position: | chr2:50606253-50606074 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 7, 124 |
| Conread position: | 110-304 |
| Cow position: | chr2:47744678-47744483 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 110-307 |
| Cow position: | chr2:26102489-26102302 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 110-307 |
| Cow position: | chr2:65036670-65036857 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 110-307 |
| Cow position: | chr2:76335127-76334939 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 115 |
| Conread position: | 110-308 |
| Cow position: | chr2:43358263-43358448 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 117-307 |
| Cow position: | chr2:9357712-9357892 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 117-307 |
| Cow position: | chr2:50357163-50357341 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 38 |
| Conread position: | 117-307 |
| Cow position: | chr2:70933457-70933633 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 119-310 |
| Cow position: | chr2:40428110-40428289 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 124-307 |
| Cow position: | chr2:46194381-46194209 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 159-307 |
| Cow position: | chr2:29383417-29383559 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.