Cow genome map
| Conread name: | rmga09_j8.y1 |
| Conread position: | 1-299 |
| Cow position: | chr3:41947297-41947569 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-304 |
| Cow position: | chr3:470601-470907 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 94, 182 |
| Conread position: | 1-307 |
| Cow position: | chr3:9843408-9843107 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 94, 85 |
| Conread position: | 1-307 |
| Cow position: | chr3:14717631-14717341 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 59 |
| Conread position: | 1-307 |
| Cow position: | chr3:22353975-22353663 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 1-307 |
| Cow position: | chr3:42603656-42603355 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 25, 238 |
| Conread position: | 1-307 |
| Cow position: | chr3:64536720-64537016 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 8 |
| Conread position: | 1-307 |
| Cow position: | chr3:74561581-74561869 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-307 |
| Cow position: | chr3:79139156-79139452 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 106, 200 |
| Conread position: | 1-307 |
| Cow position: | chr3:82473880-82473572 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 200 |
| Conread position: | 1-307 |
| Cow position: | chr3:82618212-82617918 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 117, 49 |
| Conread position: | 1-308 |
| Cow position: | chr3:76188519-76188223 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 86, 184 |
| Conread position: | 1-314 |
| Cow position: | chr3:66738598-66738292 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 2-302 |
| Cow position: | chr3:56575831-56576118 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 2-307 |
| Cow position: | chr3:8753289-8752990 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 2-307 |
| Cow position: | chr3:24639411-24639110 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 200, 99 |
| Conread position: | 2-307 |
| Cow position: | chr3:72615283-72614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 3-299 |
| Cow position: | chr3:38497774-38497476 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 92, 83 |
| Conread position: | 3-304 |
| Cow position: | chr3:33327527-33327221 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 97, 235 |
| Conread position: | 3-304 |
| Cow position: | chr3:68303151-68302848 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 3-304 |
| Cow position: | chr3:68342431-68342724 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 226 |
| Conread position: | 3-307 |
| Cow position: | chr3:26920719-26920426 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 115, 71 |
| Conread position: | 3-307 |
| Cow position: | chr3:58865636-58865950 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 92, 249 |
| Conread position: | 5-307 |
| Cow position: | chr3:78242163-78241869 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 7, 121 |
| Conread position: | 7-304 |
| Cow position: | chr3:14626333-14626620 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 109, 73 |
| Conread position: | 11-294 |
| Cow position: | chr3:23476813-23476548 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 11-304 |
| Cow position: | chr3:16115380-16115104 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 11-307 |
| Cow position: | chr3:69510567-69510849 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 11-307 |
| Cow position: | chr3:70913264-70913560 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 177 |
| Conread position: | 11-307 |
| Cow position: | chr3:72104473-72104753 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 22-295 |
| Cow position: | chr3:80053730-80053995 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 25-299 |
| Cow position: | chr3:69447896-69448160 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 78, 95 |
| Conread position: | 36-299 |
| Cow position: | chr3:17899610-17899359 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 37-330 |
| Cow position: | chr3:53091312-53091019 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 78, 124 |
| Conread position: | 41-304 |
| Cow position: | chr3:20780098-20780346 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 46-314 |
| Cow position: | chr3:60331727-60331469 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 107-307 |
| Cow position: | chr3:46332763-46332955 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 48 |
| Conread position: | 109-304 |
| Cow position: | chr3:43007711-43007893 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 151, 52 |
| Conread position: | 109-307 |
| Cow position: | chr3:31287686-31287870 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 110-304 |
| Cow position: | chr3:27867542-27867358 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 110-307 |
| Cow position: | chr3:35369373-35369169 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 118, 104 |
| Conread position: | 110-307 |
| Cow position: | chr3:64318616-64318427 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 110-324 |
| Cow position: | chr3:78646979-78646772 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 111-307 |
| Cow position: | chr3:73956708-73956528 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 111-307 |
| Cow position: | chr3:82075375-82075566 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 112-307 |
| Cow position: | chr3:73936313-73936500 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 89, 124 |
| Conread position: | 115-307 |
| Cow position: | chr3:43425010-43424832 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 116-307 |
| Cow position: | chr3:79375681-79375499 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 119-304 |
| Cow position: | chr3:26659634-26659812 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 182, 57 |
| Conread position: | 120-307 |
| Cow position: | chr3:39171800-39171978 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 130-305 |
| Cow position: | chr3:45897245-45897069 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 130-305 |
| Cow position: | chr3:45972811-45972987 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 129, 0 |
Show alignments to all cow chromosomes.