Cow genome map
| Conread name: | rmga09_j8.y1 |
| Conread position: | 1-304 |
| Cow position: | chr5:27615389-27615079 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 70, 169 |
| Conread position: | 1-307 |
| Cow position: | chr5:11954433-11954715 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-307 |
| Cow position: | chr5:23641117-23641414 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 1-307 |
| Cow position: | chr5:26401943-26402239 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 1-307 |
| Cow position: | chr5:39710710-39710423 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-309 |
| Cow position: | chr5:41604485-41604186 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 1-321 |
| Cow position: | chr5:64122166-64122482 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 29, 161 |
| Conread position: | 1-327 |
| Cow position: | chr5:30359381-30359690 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 89, 102 |
| Conread position: | 2-307 |
| Cow position: | chr5:57365202-57365491 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 3-306 |
| Cow position: | chr5:44752439-44752736 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 97, 83 |
| Conread position: | 3-307 |
| Cow position: | chr5:68481095-68480781 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 86, 236 |
| Conread position: | 3-307 |
| Cow position: | chr5:72902430-72902131 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 107, 98 |
| Conread position: | 3-344 |
| Cow position: | chr5:67932593-67932928 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 32 |
| Conread position: | 4-331 |
| Cow position: | chr5:28946187-28946507 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 7-323 |
| Cow position: | chr5:46611218-46611529 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 99 |
| Conread position: | 8-299 |
| Cow position: | chr5:3696259-3695979 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 25 |
| Conread position: | 11-307 |
| Cow position: | chr5:33270336-33270058 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 11-364 |
| Cow position: | chr5:62268449-62268098 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 76, 132 |
| Conread position: | 16-307 |
| Cow position: | chr5:26376428-26376145 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 71, 98 |
| Conread position: | 19-307 |
| Cow position: | chr5:63607706-63607985 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 70, 217 |
| Conread position: | 52-304 |
| Cow position: | chr5:29844130-29843891 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 55-304 |
| Cow position: | chr5:30978206-30977955 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 106-307 |
| Cow position: | chr5:29560104-29559913 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 109-307 |
| Cow position: | chr5:10789939-10790136 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 150, 17 |
| Conread position: | 109-307 |
| Cow position: | chr5:33265888-33266074 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 109-307 |
| Cow position: | chr5:34115412-34115224 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 109-307 |
| Cow position: | chr5:49479094-49478905 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 160, 50 |
| Conread position: | 109-309 |
| Cow position: | chr5:73526095-73525906 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 110-298 |
| Cow position: | chr5:39441799-39441623 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 110-304 |
| Cow position: | chr5:31661403-31661582 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 110-307 |
| Cow position: | chr5:57941120-57941307 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 110-518 |
| Cow position: | chr5:9430712-9431134 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 12 |
| Conread position: | 112-295 |
| Cow position: | chr5:12563292-12563467 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 112-307 |
| Cow position: | chr5:51502659-51502471 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 74, 120 |
| Conread position: | 117-303 |
| Cow position: | chr5:26046055-26045878 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 119-307 |
| Cow position: | chr5:57584777-57584599 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 125-307 |
| Cow position: | chr5:29756057-29755882 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 84, 110 |
Show alignments to all cow chromosomes.