Cow genome map
| Conread name: | rmga09_j8.y1 |
| Conread position: | 1-304 |
| Cow position: | chrX:630435-630722 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 1-304 |
| Cow position: | chrX:27486283-27485990 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 117, 95 |
| Conread position: | 1-304 |
| Cow position: | chrX:36840747-36840447 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 27, 240 |
| Conread position: | 1-304 |
| Cow position: | chrX:40452338-40452635 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 231 |
| Conread position: | 1-307 |
| Cow position: | chrX:3223179-3223465 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-307 |
| Cow position: | chrX:5247138-5246831 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 244 |
| Conread position: | 1-307 |
| Cow position: | chrX:9298958-9299264 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 88, 229 |
| Conread position: | 1-307 |
| Cow position: | chrX:24827202-24826916 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 93 |
| Conread position: | 1-313 |
| Cow position: | chrX:12110780-12111081 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 108, 161 |
| Conread position: | 1-328 |
| Cow position: | chrX:1616173-1616493 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 238 |
| Conread position: | 2-295 |
| Cow position: | chrX:39288294-39288579 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 2-299 |
| Cow position: | chrX:3154373-3154664 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 98, 86 |
| Conread position: | 2-307 |
| Cow position: | chrX:25281594-25281907 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 235 |
| Conread position: | 3-304 |
| Cow position: | chrX:28847006-28847296 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 116, 99 |
| Conread position: | 3-307 |
| Cow position: | chrX:917499-917794 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 112, 104 |
| Conread position: | 3-307 |
| Cow position: | chrX:22329696-22329993 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 160 |
| Conread position: | 5-306 |
| Cow position: | chrX:39546103-39546395 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 69 |
| Conread position: | 5-307 |
| Cow position: | chrX:160164-160457 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 113, 68 |
| Conread position: | 11-307 |
| Cow position: | chrX:20801643-20801354 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 11-307 |
| Cow position: | chrX:24169450-24169737 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 135 |
| Conread position: | 11-307 |
| Cow position: | chrX:27450156-27450464 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 125, 91 |
| Conread position: | 11-307 |
| Cow position: | chrX:35288524-35288237 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 27 |
| Conread position: | 14-304 |
| Cow position: | chrX:33822961-33822683 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 88, 27 |
| Conread position: | 44-307 |
| Cow position: | chrX:37760698-37760436 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 74-295 |
| Cow position: | chrX:20446357-20446569 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 75-341 |
| Cow position: | chrX:25966856-25966596 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 109-307 |
| Cow position: | chrX:9855045-9854856 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 126 |
| Conread position: | 109-307 |
| Cow position: | chrX:9953886-9953698 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 126 |
| Conread position: | 110-303 |
| Cow position: | chrX:6695581-6695763 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 110-304 |
| Cow position: | chrX:158068-158248 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 110-304 |
| Cow position: | chrX:13404581-13404766 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 110-307 |
| Cow position: | chrX:4409336-4409142 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 113, 87 |
| Conread position: | 110-307 |
| Cow position: | chrX:6203273-6203087 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 110-307 |
| Cow position: | chrX:38999661-38999479 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 110-307 |
| Cow position: | chrX:43980515-43980328 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 111-307 |
| Cow position: | chrX:16284211-16284397 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 113-307 |
| Cow position: | chrX:3582958-3582774 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 116-307 |
| Cow position: | chrX:19878795-19878616 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 117-304 |
| Cow position: | chrX:1728811-1728990 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 117-304 |
| Cow position: | chrX:8517365-8517188 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 117-304 |
| Cow position: | chrX:25425895-25425719 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 117-307 |
| Cow position: | chrX:16324490-16324670 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 117-307 |
| Cow position: | chrX:39126071-39125897 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 117-307 |
| Cow position: | chrX:39938993-39939171 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 124-321 |
| Cow position: | chrX:40788910-40788722 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 127-307 |
| Cow position: | chrX:38840603-38840432 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.