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Cow genome map

           
Conread name:
           
rmga38_o5.y1
        

               
Conread position:
               
1-185
               

               
Cow position:
               
chrX:31436311-31436132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chrX:21861844-21862153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
151, 39
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chrX:28111335-28110977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
3-140
               

               
Cow position:
               
chrX:33020312-33020186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:25419335-25419527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chrX:2300760-2300537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
150, 32
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chrX:39555990-39556237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
157, 28
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chrX:1616221-1616481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
157, 38
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chrX:36840698-36840431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 30
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chrX:21665767-21666024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
3-292
               

               
Cow position:
               
chrX:38936527-38936247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
151, 42
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chrX:6654475-6654780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
3-320
               

               
Cow position:
               
chrX:32128154-32128466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
60, 189
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chrX:34238547-34238239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chrX:3207735-3208044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
156, 38
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chrX:18695093-18695426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chrX:11655915-11655569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
151, 71
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chrX:35388079-35388420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
151, 42
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chrX:31949104-31949441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 30
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chrX:40269303-40268964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 38
               

               
Conread position:
               
3-357
               

               
Cow position:
               
chrX:12249633-12249289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 40
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chrX:10866041-10866382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 37
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chrX:7571733-7571386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
160, 30
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chrX:17497923-17497579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 38
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chrX:42086688-42086346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
156, 38
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chrX:35609813-35609468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 39
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:1978336-1977973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 199
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:4123662-4123316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 38
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:6012279-6012625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
158, 40
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:7806205-7805856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 7
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:9837965-9837598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:11073362-11073729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 188
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:17743887-17743550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
157, 38
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:20582857-20582511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 38
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:20653223-20652888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
154, 39
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:35288487-35288135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
160, 38
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:35681173-35680825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
63, 39
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:37906791-37906436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
31, 104
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:38071944-38072287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
157, 38
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:40452386-40452740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:42470110-42470456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 30
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chrX:33855407-33855590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
150, 37
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chrX:19023262-19022980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
4-307
               

               
Cow position:
               
chrX:27020028-27019745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chrX:33803187-33803533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 26
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chrX:45658247-45658591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
156, 46
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chrX:12724615-12724247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 233
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chrX:15994226-15993874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chrX:21593109-21592767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
156, 36
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chrX:24169490-24169782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
6-364
               

               
Cow position:
               
chrX:27705413-27705073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
154, 18
               

               
Conread position:
               
6-364
               

               
Cow position:
               
chrX:33827198-33827569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chrX:43199253-43199036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
142, 29
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chrX:38577350-38577118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
148, 29
               

               
Conread position:
               
12-356
               

               
Cow position:
               
chrX:29289394-29289065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
210, 29
               

               
Conread position:
               
12-364
               

               
Cow position:
               
chrX:11082796-11083130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 33
               

               
Conread position:
               
12-364
               

               
Cow position:
               
chrX:27450203-27450571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
108, 29
               

               
Conread position:
               
13-364
               

               
Cow position:
               
chrX:10415709-10416045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 17
               

               
Conread position:
               
14-364
               

               
Cow position:
               
chrX:3808224-3807883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
149, 26
               

               
Conread position:
               
14-364
               

               
Cow position:
               
chrX:22888475-22888138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
146, 29
               

               
Conread position:
               
14-364
               

               
Cow position:
               
chrX:43647926-43648275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 59
               

               
Conread position:
               
27-270
               

               
Cow position:
               
chrX:21626148-21626383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
31-361
               

               
Cow position:
               
chrX:17995260-17994942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
132, 43
               

               
Conread position:
               
31-364
               

               
Cow position:
               
chrX:6372982-6372661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
129, 43
               

               
Conread position:
               
31-364
               

               
Cow position:
               
chrX:24587653-24587974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
129, 45
               

               
Conread position:
               
31-364
               

               
Cow position:
               
chrX:29841368-29841689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
31-364
               

               
Cow position:
               
chrX:45237267-45236946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
129, 43
               

               
Conread position:
               
34-361
               

               
Cow position:
               
chrX:27749211-27749526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
34-364
               

               
Cow position:
               
chrX:10915836-10915518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
125, 40
               

               
Conread position:
               
34-364
               

               
Cow position:
               
chrX:30531234-30531548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
118, 40
               

               
Conread position:
               
36-283
               

               
Cow position:
               
chrX:24809174-24809406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
36-330
               

               
Cow position:
               
chrX:43511215-43510933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
107, 26
               

               
Conread position:
               
36-361
               

               
Cow position:
               
chrX:14121956-14122268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
122, 38
               

               
Conread position:
               
36-361
               

               
Cow position:
               
chrX:42591521-42591208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:2160561-2160245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:6566870-6566554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 39
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:7486660-7486344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:8641584-8641268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 28
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:9154156-9153840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:9168818-9169134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:14458372-14458687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
294, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:14801021-14801338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:15114467-15114151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:18462179-18462495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:18656009-18656325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:21344190-21343874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:22521425-22521741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:26275935-26275618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:29169538-29169861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
119, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:29915431-29915745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:38230471-38230787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
129, 38
               

               
Conread position:
               
36-364
               

               
Cow position:
               
chrX:42121099-42120783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
62-184
               

               
Cow position:
               
chrX:46044796-46044672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 57
               

               
Conread position:
               
62-276
               

               
Cow position:
               
chrX:16284195-16284409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 135
               

               
Conread position:
               
62-352
               

               
Cow position:
               
chrX:38549192-38548899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
62-362
               

               
Cow position:
               
chrX:25281704-25282008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 125
               

               
Conread position:
               
62-364
               

               
Cow position:
               
chrX:7513268-7512972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
62-364
               

               
Cow position:
               
chrX:46698293-46698596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
68-201
               

               
Cow position:
               
chrX:4943232-4943368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
70-177
               

               
Cow position:
               
chrX:26754015-26754125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
70-299
               

               
Cow position:
               
chrX:6652302-6652523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-307
               

               
Cow position:
               
chrX:7311763-7311533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-307
               

               
Cow position:
               
chrX:11377343-11377109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
70-326
               

               
Cow position:
               
chrX:21319466-21319213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
70-331
               

               
Cow position:
               
chrX:43980521-43980261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 42
               

               
Conread position:
               
70-334
               

               
Cow position:
               
chrX:33172188-33172455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
89, 107
               

               
Conread position:
               
70-350
               

               
Cow position:
               
chrX:529574-529292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
55, 115
               

               
Conread position:
               
70-350
               

               
Cow position:
               
chrX:14162961-14162685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 119
               

               
Conread position:
               
70-350
               

               
Cow position:
               
chrX:24441477-24441756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
90, 119
               

               
Conread position:
               
70-352
               

               
Cow position:
               
chrX:671239-671517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-355
               

               
Cow position:
               
chrX:36514223-36513951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
203, 63
               

               
Conread position:
               
70-356
               

               
Cow position:
               
chrX:3405585-3405867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 121
               

               
Conread position:
               
70-356
               

               
Cow position:
               
chrX:5353533-5353815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-356
               

               
Cow position:
               
chrX:5866916-5866634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
70-356
               

               
Cow position:
               
chrX:22603669-22603950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 120
               

               
Conread position:
               
70-356
               

               
Cow position:
               
chrX:38151458-38151177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-357
               

               
Cow position:
               
chrX:3570221-3569939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-357
               

               
Cow position:
               
chrX:11949723-11950005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-357
               

               
Cow position:
               
chrX:14819482-14819200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
87, 120
               

               
Conread position:
               
70-361
               

               
Cow position:
               
chrX:9012097-9011810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
260, 91
               

               
Conread position:
               
70-361
               

               
Cow position:
               
chrX:20877993-20878279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
90, 112
               

               
Conread position:
               
70-361
               

               
Cow position:
               
chrX:22568249-22568534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 74
               

               
Conread position:
               
70-361
               

               
Cow position:
               
chrX:37133764-37134050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-362
               

               
Cow position:
               
chrX:19400600-19400306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 114
               

               
Conread position:
               
70-362
               

               
Cow position:
               
chrX:36294902-36294616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
156, 71
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:323685-323395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:1550720-1550427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:1576493-1576783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
93, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:2559192-2559480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:3372088-3372373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
260, 45
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:4905219-4905510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:5288917-5289207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:5334050-5334339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:9128826-9128536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:11461102-11461391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:11566684-11566394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
90, 121
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:12360659-12360368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
93, 124
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:12466265-12465975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:13049672-13049960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:15120119-15120406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
266, 91
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:15531385-15531672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
203, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:15620762-15621052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:16711724-16711435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:16853619-16853910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:17892313-17892019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 126
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:18024809-18024520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
93, 122
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:18078140-18078431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:19399548-19399258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:20742756-20742467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:20957788-20957495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:21768574-21768284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:22493777-22493487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
90, 125
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:23038227-23038517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:23280776-23280487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:23386769-23387058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:23396376-23396087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:24280705-24280414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 124
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:24317836-24317547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 126
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:24735708-24735424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
260, 78
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:26617151-26617441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:27759477-27759187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:29903512-29903222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:30139014-30139304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:30143515-30143804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 32
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:30180156-30180447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:30199222-30199512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:30816499-30816789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:30837143-30836853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:30940951-30940661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:31605454-31605164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:31814119-31814409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:32144393-32144682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:34519496-34519206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:35240634-35240344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:36534965-36535255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:36794764-36794474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:37764427-37764717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:37772664-37772954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:38014864-38014574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:39291973-39292263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:39714319-39714031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:40121245-40121523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
262, 84
               

               
Conread position:
               
70-364
               

               
Cow position:
               
chrX:48423705-48423415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
71-269
               

               
Cow position:
               
chrX:630529-630730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
71-364
               

               
Cow position:
               
chrX:2151163-2151452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
89, 119
               

               
Conread position:
               
71-364
               

               
Cow position:
               
chrX:30688834-30688545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 122
               

               
Conread position:
               
71-364
               

               
Cow position:
               
chrX:37905788-37905485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
72-347
               

               
Cow position:
               
chrX:20976292-20976570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
72-356
               

               
Cow position:
               
chrX:6493500-6493220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 118
               

               
Conread position:
               
72-361
               

               
Cow position:
               
chrX:508388-508675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
72-364
               

               
Cow position:
               
chrX:10351631-10351341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
72-364
               

               
Cow position:
               
chrX:14030786-14030498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
88, 121
               

               
Conread position:
               
72-364
               

               
Cow position:
               
chrX:15259851-15260139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
91, 121
               

               
Conread position:
               
72-364
               

               
Cow position:
               
chrX:18897883-18898170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
88, 121
               

               
Conread position:
               
72-364
               

               
Cow position:
               
chrX:27305694-27305409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 100
               

               
Conread position:
               
72-364
               

               
Cow position:
               
chrX:27594412-27594700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
91, 121
               

               
Conread position:
               
72-364
               

               
Cow position:
               
chrX:29942919-29942630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 122
               

               
Conread position:
               
73-364
               

               
Cow position:
               
chrX:6906049-6906327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 119
               

               
Conread position:
               
74-309
               

               
Cow position:
               
chrX:40322682-40322451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
86, 48
               

               
Conread position:
               
74-353
               

               
Cow position:
               
chrX:23927406-23927695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 45
               

               
Conread position:
               
74-364
               

               
Cow position:
               
chrX:21973709-21973419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
74-364
               

               
Cow position:
               
chrX:42540370-42540079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
86, 116
               

               
Conread position:
               
76-356
               

               
Cow position:
               
chrX:15038037-15038322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
87, 103
               

               
Conread position:
               
76-362
               

               
Cow position:
               
chrX:25150959-25150670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
71, 143
               

               
Conread position:
               
76-362
               

               
Cow position:
               
chrX:27486174-27485885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
76-364
               

               
Cow position:
               
chrX:4409336-4409039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 93
               

               
Conread position:
               
76-364
               

               
Cow position:
               
chrX:20504530-20504242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
76-364
               

               
Cow position:
               
chrX:21785531-21785249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
76-364
               

               
Cow position:
               
chrX:38999661-38999383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
77-315
               

               
Cow position:
               
chrX:24259847-24260081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
77-361
               

               
Cow position:
               
chrX:2185991-2185722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
8, 71
               

               
Conread position:
               
77-364
               

               
Cow position:
               
chrX:17265283-17265567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
82, 122
               

               
Conread position:
               
78-327
               

               
Cow position:
               
chrX:38840617-38840369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
78-364
               

               
Cow position:
               
chrX:18684544-18684259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 115
               

               
Conread position:
               
79-347
               

               
Cow position:
               
chrX:42381667-42381929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 111
               

               
Conread position:
               
79-356
               

               
Cow position:
               
chrX:8517369-8517092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 119
               

               
Conread position:
               
79-363
               

               
Cow position:
               
chrX:34993938-34993652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
5, 112
               

               
Conread position:
               
79-364
               

               
Cow position:
               
chrX:21815930-21815646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 124
               

               
Conread position:
               
79-364
               

               
Cow position:
               
chrX:23666944-23666663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
12, 5
               

               
Conread position:
               
81-312
               

               
Cow position:
               
chrX:39288409-39288640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
145, 82
               

               
Conread position:
               
81-352
               

               
Cow position:
               
chrX:16086365-16086631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
81-356
               

               
Cow position:
               
chrX:27095878-27095607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 112
               

               
Conread position:
               
81-361
               

               
Cow position:
               
chrX:16359250-16359526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
81-364
               

               
Cow position:
               
chrX:11820117-11819844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
74, 108
               

               
Conread position:
               
81-364
               

               
Cow position:
               
chrX:20675859-20675587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
79, 114
               

               
Conread position:
               
82-273
               

               
Cow position:
               
chrX:41683119-41682929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
83-362
               

               
Cow position:
               
chrX:21191636-21191354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 110
               

               
Conread position:
               
83-364
               

               
Cow position:
               
chrX:38961089-38961366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
77, 107
               

               
Conread position:
               
84-362
               

               
Cow position:
               
chrX:4329324-4329602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
85-328
               

               
Cow position:
               
chrX:38705323-38705080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
86-315
               

               
Cow position:
               
chrX:41305875-41306102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
86-356
               

               
Cow position:
               
chrX:19878791-19878521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 94
               

               
Conread position:
               
86-364
               

               
Cow position:
               
chrX:3471481-3471202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
175, 86
               

               
Conread position:
               
86-364
               

               
Cow position:
               
chrX:9911013-9911294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
86-364
               

               
Cow position:
               
chrX:24366197-24366471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
74, 6
               

               
Conread position:
               
87-358
               

               
Cow position:
               
chrX:3145757-3145489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
87-364
               

               
Cow position:
               
chrX:6765986-6766265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 5
               

               
Conread position:
               
88-330
               

               
Cow position:
               
chrX:13029889-13030124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 102
               

               
Conread position:
               
88-364
               

               
Cow position:
               
chrX:18487962-18488234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
89-323
               

               
Cow position:
               
chrX:5648644-5648874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
71, 78
               

               
Conread position:
               
89-363
               

               
Cow position:
               
chrX:13405545-13405816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
90-364
               

               
Cow position:
               
chrX:44054555-44054283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
91-364
               

               
Cow position:
               
chrX:23316671-23316940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 103
               

               
Conread position:
               
91-364
               

               
Cow position:
               
chrX:47368497-47368769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
92-364
               

               
Cow position:
               
chrX:21662843-21662575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
68, 104
               

               
Conread position:
               
93-364
               

               
Cow position:
               
chrX:17291677-17291410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
67, 100
               

               
Conread position:
               
95-364
               

               
Cow position:
               
chrX:27590288-27590554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
65, 99
               

               
Conread position:
               
96-356
               

               
Cow position:
               
chrX:21025298-21025552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
130, 57
               

               
Conread position:
               
98-364
               

               
Cow position:
               
chrX:20954268-20954011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 92
               

               
Conread position:
               
99-362
               

               
Cow position:
               
chrX:20382790-20383055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
61, 119
               

               
Conread position:
               
100-364
               

               
Cow position:
               
chrX:20726500-20726240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
101-361
               

               
Cow position:
               
chrX:44873802-44874051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
231, 60
               

               
Conread position:
               
101-362
               

               
Cow position:
               
chrX:18989205-18988943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
105-283
               

               
Cow position:
               
chrX:30729761-30729938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 94
               

               
Conread position:
               
110-364
               

               
Cow position:
               
chrX:6581664-6581414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
113-364
               

               
Cow position:
               
chrX:9641705-9641952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 80
               

               
Conread position:
               
114-364
               

               
Cow position:
               
chrX:7288567-7288311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
120-364
               

               
Cow position:
               
chrX:38642745-38642500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
121-364
               

               
Cow position:
               
chrX:16808117-16808355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
125-364
               

               
Cow position:
               
chrX:3096040-3096275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
147-364
               

               
Cow position:
               
chrX:2648666-2648881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
185, 41
               

               
Conread position:
               
157-364
               

               
Cow position:
               
chrX:16782960-16782760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
177, 30
               

               
Conread position:
               
169-362
               

               
Cow position:
               
chrX:16514573-16514765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
198-362
               

               
Cow position:
               
chrX:42380191-42380359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
198-364
               

               
Cow position:
               
chrX:22125216-22125387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
200-364
               

               
Cow position:
               
chrX:30980243-30980413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
205-361
               

               
Cow position:
               
chrX:40187621-40187461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
206-364
               

               
Cow position:
               
chrX:42010675-42010514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
207-361
               

               
Cow position:
               
chrX:4325851-4326007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 61
               

               
Conread position:
               
211-330
               

               
Cow position:
               
chrX:4794871-4794991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
216-357
               

               
Cow position:
               
chrX:36900861-36901002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
217-361
               

               
Cow position:
               
chrX:12179306-12179157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
217-364
               

               
Cow position:
               
chrX:866027-865876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
217-364
               

               
Cow position:
               
chrX:18194321-18194170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
217-364
               

               
Cow position:
               
chrX:18455151-18455302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
6, 136
               

               
Conread position:
               
222-356
               

               
Cow position:
               
chrX:4482576-4482439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
222-364
               

               
Cow position:
               
chrX:39730515-39730659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
224-364
               

               
Cow position:
               
chrX:10301742-10301600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 13
               

               
Conread position:
               
225-364
               

               
Cow position:
               
chrX:16020763-16020904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
226-364
               

               
Cow position:
               
chrX:25361182-25361042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 100
               

               
Conread position:
               
230-364
               

               
Cow position:
               
chrX:39702465-39702330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               
Show alignments to all cow chromosomes.