Cow genome map

Conread name: rmgm01_b12.y1

Conread position: 4-326
Cow position: chr24:15617336-15617680 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 10, 55

Conread position: 54-380
Cow position: chr24:31378819-31378477 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 107

Conread position: 80-379
Cow position: chr24:32669320-32669000 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 26, 0

Conread position: 91-389
Cow position: chr24:39607518-39607840 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 15, 293

Conread position: 108-386
Cow position: chr24:15919726-15919421 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 8, 276

Conread position: 121-388
Cow position: chr24:36715537-36715264 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 68

Conread position: 129-378
Cow position: chr24:18374765-18374499 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 243

Conread position: 134-380
Cow position: chr24:43635415-43635158 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 86

Conread position: 137-356
Cow position: chr24:5944834-5945066 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 26, 92

Conread position: 137-380
Cow position: chr24:35836270-35836515 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 52, 30

Conread position: 137-380
Cow position: chr24:41308070-41307815 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 213

Conread position: 144-384
Cow position: chr24:19769457-19769217 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 143

Conread position: 151-379
Cow position: chr24:29782127-29781886 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 31, 6

Conread position: 151-380
Cow position: chr24:43364322-43364086 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 146

Conread position: 155-380
Cow position: chr24:40091616-40091852 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 17

Conread position: 155-389
Cow position: chr24:18076105-18075863 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 42, 119

Conread position: 157-379
Cow position: chr24:28700007-28699781 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 153
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 24, 193

Conread position: 157-387
Cow position: chr24:28724391-28724160 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 178

Conread position: 159-388
Cow position: chr24:31812140-31811900 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 37, 9

Conread position: 160-363
Cow position: chr24:16556687-16556896 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 20

Conread position: 160-380
Cow position: chr24:17860308-17860528 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 65, 126

Conread position: 166-389
Cow position: chr24:37386406-37386626 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 30, 5

Conread position: 167-388
Cow position: chr24:29679363-29679597 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 168-362
Cow position: chr24:15473896-15473700 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 52

Conread position: 168-379
Cow position: chr24:29063708-29063922 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 6, 119

Conread position: 168-380
Cow position: chr24:25245983-25245772 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 6

Conread position: 168-380
Cow position: chr24:27719809-27720029 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 6, 150

Conread position: 168-391
Cow position: chr24:28062895-28062659 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 12

Conread position: 171-362
Cow position: chr24:11887100-11886897 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 171-380
Cow position: chr24:24491077-24491291 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 10

Conread position: 172-377
Cow position: chr24:14279833-14279613 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 11

Conread position: 172-380
Cow position: chr24:36486119-36486336 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 17, 8

Conread position: 172-389
Cow position: chr24:6507828-6508049 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 26, 41

Conread position: 173-361
Cow position: chr24:14913614-14913792 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 173-378
Cow position: chr24:25229117-25229332 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 19, 198

Conread position: 173-380
Cow position: chr24:28279576-28279367 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 53, 23

Conread position: 173-389
Cow position: chr24:39259098-39258878 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 23, 191

Conread position: 175-388
Cow position: chr24:3165754-3165536 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 21, 65

Conread position: 179-378
Cow position: chr24:21093532-21093736 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 33, 27

Conread position: 195-379
Cow position: chr24:28349492-28349307 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 87

Conread position: 195-388
Cow position: chr24:33098577-33098774 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 34, 94

Conread position: 196-379
Cow position: chr24:13297804-13297981 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 10

Conread position: 196-380
Cow position: chr24:5754749-5754564 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 113

Conread position: 196-380
Cow position: chr24:35794825-35795017 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 30, 172

Conread position: 198-373
Cow position: chr24:32158366-32158540 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 29, 156

Conread position: 198-374
Cow position: chr24:12992965-12992784 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 167

Conread position: 198-378
Cow position: chr24:38375194-38375010 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 28, 160

Conread position: 198-378
Cow position: chr24:39350309-39350483 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 198-380
Cow position: chr24:39681763-39681578 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 27, 18

Conread position: 198-388
Cow position: chr24:34369098-34369291 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 28, 160

Conread position: 198-389
Cow position: chr24:26846364-26846564 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 28, 144

Conread position: 198-389
Cow position: chr24:30860546-30860350 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 163

Conread position: 198-390
Cow position: chr24:29027953-29027762 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 88

Conread position: 199-380
Cow position: chr24:39955135-39955323 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 33, 26

Conread position: 199-387
Cow position: chr24:39500370-39500567 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 170

Conread position: 199-390
Cow position: chr24:5849490-5849695 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 202-369
Cow position: chr24:32204889-32205060 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 162

Conread position: 202-370
Cow position: chr24:17955536-17955715 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 164

Conread position: 202-380
Cow position: chr24:2730664-2730847 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 163

Conread position: 202-380
Cow position: chr24:27967982-27967803 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 82

Conread position: 202-380
Cow position: chr24:40346604-40346786 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 156

Conread position: 202-388
Cow position: chr24:25677943-25677749 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 24, 121

Conread position: 202-389
Cow position: chr24:27906343-27906142 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 205-380
Cow position: chr24:33621586-33621763 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 67, 158

Conread position: 205-380
Cow position: chr24:33944305-33944130 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 111

Conread position: 205-388
Cow position: chr24:39218939-39219131 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 21, 165

Conread position: 205-389
Cow position: chr24:37204976-37205166 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 21, 160

Conread position: 206-389
Cow position: chr24:32758858-32759056 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 169

Conread position: 208-379
Cow position: chr24:6665585-6665758 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 75, 8

Conread position: 208-380
Cow position: chr24:38643530-38643359 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 75, 17

Conread position: 208-388
Cow position: chr24:30900334-30900512 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 93, 8

Conread position: 210-380
Cow position: chr24:28689601-28689433 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 58

Conread position: 210-389
Cow position: chr24:7023290-7023108 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 73, 13

Conread position: 213-370
Cow position: chr24:42816885-42816730 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 70, 99

Conread position: 213-380
Cow position: chr24:5376171-5376339 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 29

Conread position: 214-345
Cow position: chr24:27207305-27207438 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 214-380
Cow position: chr24:38267082-38266916 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 59

Conread position: 216-380
Cow position: chr24:44478065-44478228 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 11

Conread position: 218-377
Cow position: chr24:16162681-16162524 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 140

Conread position: 219-391
Cow position: chr24:42943239-42943410 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 12

Conread position: 222-380
Cow position: chr24:28060545-28060703 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 24, 134

Conread position: 226-380
Cow position: chr24:23556450-23556606 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 61, 133

Conread position: 226-380
Cow position: chr24:32822902-32823059 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 118

Conread position: 227-374
Cow position: chr24:39483353-39483202 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 56, 137

Conread position: 227-380
Cow position: chr24:19804567-19804410 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 60, 137

Conread position: 227-380
Cow position: chr24:30178111-30177959 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 56, 67

Conread position: 227-388
Cow position: chr24:7001188-7001354 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 227-389
Cow position: chr24:43200400-43200560 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 44

Conread position: 228-380
Cow position: chr24:19466055-19466210 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 115

Conread position: 231-380
Cow position: chr24:22821890-22821736 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 134

Conread position: 232-374
Cow position: chr24:27259109-27259250 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 14, 122

Conread position: 232-389
Cow position: chr24:24854526-24854373 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 233-380
Cow position: chr24:15288731-15288580 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 131

Conread position: 233-389
Cow position: chr24:29845401-29845556 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 127

Conread position: 235-388
Cow position: chr24:20024479-20024322 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 48, 129

Conread position: 240-380
Cow position: chr24:6342037-6341892 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 240-380
Cow position: chr24:43832221-43832083 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 119, 0

Conread position: 242-380
Cow position: chr24:15666545-15666686 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 121

Conread position: 242-385
Cow position: chr24:35429814-35429956 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 71

Conread position: 243-380
Cow position: chr24:41963491-41963352 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 40, 107

Conread position: 245-376
Cow position: chr24:22317806-22317670 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 119

Show alignments to all cow chromosomes.