Cow genome map

Conread name: rmgm01_b12.y1

Conread position: 4-389
Cow position: chr27:11762904-11762521 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 262
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 129, 55

Conread position: 7-380
Cow position: chr27:26441251-26440849 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 277
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 96, 61

Conread position: 7-389
Cow position: chr27:21578778-21578384 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 269
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 96, 66

Conread position: 11-368
Cow position: chr27:6036971-6037319 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 57

Conread position: 12-355
Cow position: chr27:10997317-10997688 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 32, 301

Conread position: 51-389
Cow position: chr27:23731652-23731318 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 228
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 147, 52

Conread position: 75-327
Cow position: chr27:3985070-3985331 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 248

Conread position: 94-380
Cow position: chr27:25379905-25380200 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 41

Conread position: 114-380
Cow position: chr27:16100089-16099810 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 17, 89

Conread position: 134-388
Cow position: chr27:31372342-31372076 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 197

Conread position: 137-389
Cow position: chr27:536421-536675 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 16

Conread position: 152-389
Cow position: chr27:4835630-4835388 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 19

Conread position: 154-389
Cow position: chr27:15200674-15200915 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 68

Conread position: 157-388
Cow position: chr27:24321161-24321405 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 214

Conread position: 159-380
Cow position: chr27:31251334-31251115 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 9

Conread position: 160-379
Cow position: chr27:6454190-6454421 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 214

Conread position: 160-380
Cow position: chr27:15668789-15668558 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 31, 19

Conread position: 160-380
Cow position: chr27:16513897-16513673 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 21, 44

Conread position: 160-380
Cow position: chr27:20795772-20795993 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 126

Conread position: 160-380
Cow position: chr27:22220536-22220763 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 11

Conread position: 160-388
Cow position: chr27:11723926-11723687 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 24

Conread position: 161-378
Cow position: chr27:1498297-1498521 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 162

Conread position: 164-380
Cow position: chr27:27528369-27528152 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 16

Conread position: 165-380
Cow position: chr27:24014752-24014532 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 45, 15

Conread position: 167-389
Cow position: chr27:15319437-15319670 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 27, 204

Conread position: 168-341
Cow position: chr27:15409046-15408872 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 12

Conread position: 168-357
Cow position: chr27:30670730-30670925 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 109

Conread position: 168-373
Cow position: chr27:28061772-28061560 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 28, 11

Conread position: 168-377
Cow position: chr27:1884036-1884244 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 115, 39

Conread position: 168-380
Cow position: chr27:23472244-23472467 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 27, 13

Conread position: 168-380
Cow position: chr27:28164418-28164202 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 123

Conread position: 168-389
Cow position: chr27:490885-491105 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 18, 6

Conread position: 168-390
Cow position: chr27:4673006-4673240 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 28, 204

Conread position: 169-380
Cow position: chr27:16550462-16550681 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 9, 65

Conread position: 171-374
Cow position: chr27:19685720-19685511 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 9

Conread position: 171-379
Cow position: chr27:299390-299175 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 9

Conread position: 171-380
Cow position: chr27:27259601-27259817 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 197

Conread position: 171-389
Cow position: chr27:27632615-27632391 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 25, 10

Conread position: 172-380
Cow position: chr27:12429395-12429617 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 32, 202

Conread position: 172-389
Cow position: chr27:28518286-28518503 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 33, 105

Conread position: 173-380
Cow position: chr27:16284470-16284681 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 23, 7

Conread position: 174-339
Cow position: chr27:19637636-19637812 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 174-377
Cow position: chr27:13860740-13860536 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 109, 157

Conread position: 174-380
Cow position: chr27:815360-815574 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 23, 6

Conread position: 180-391
Cow position: chr27:20641334-20641125 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 48, 104

Conread position: 183-366
Cow position: chr27:4829795-4829611 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 117

Conread position: 188-379
Cow position: chr27:25471152-25471349 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 39, 129

Conread position: 195-380
Cow position: chr27:9159215-9159403 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 12

Conread position: 197-380
Cow position: chr27:26239047-26239233 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 142

Conread position: 198-356
Cow position: chr27:14937402-14937242 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 89

Conread position: 198-360
Cow position: chr27:30856360-30856201 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 85, 18

Conread position: 198-379
Cow position: chr27:29038916-29038732 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 28, 17

Conread position: 198-380
Cow position: chr27:24341921-24342113 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 172

Conread position: 198-389
Cow position: chr27:8430415-8430221 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 28, 43

Conread position: 198-389
Cow position: chr27:29019729-29019528 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 26, 0

Conread position: 198-391
Cow position: chr27:25998726-25998925 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 28, 168

Conread position: 199-380
Cow position: chr27:1768598-1768426 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 199-380
Cow position: chr27:30476026-30476209 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 84, 41

Conread position: 199-389
Cow position: chr27:19543884-19543691 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 25, 94

Conread position: 200-378
Cow position: chr27:27843970-27843785 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 167

Conread position: 200-380
Cow position: chr27:2930572-2930387 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 165

Conread position: 202-369
Cow position: chr27:13875758-13875930 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 153

Conread position: 202-379
Cow position: chr27:26428106-26427920 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 166

Conread position: 202-380
Cow position: chr27:6500085-6500274 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 169

Conread position: 202-380
Cow position: chr27:31231060-31230885 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 25

Conread position: 202-388
Cow position: chr27:8048715-8048522 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 137

Conread position: 202-388
Cow position: chr27:16620015-16620208 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 24, 166

Conread position: 202-388
Cow position: chr27:19717949-19718137 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 156

Conread position: 205-379
Cow position: chr27:15859059-15858883 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 50

Conread position: 205-380
Cow position: chr27:22454748-22454570 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 86

Conread position: 208-389
Cow position: chr27:25676263-25676453 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 156
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 79, 8

Conread position: 209-389
Cow position: chr27:18944032-18943859 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 73

Conread position: 211-344
Cow position: chr27:9169609-9169470 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 14, 0

Conread position: 211-360
Cow position: chr27:20037090-20036938 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 74

Conread position: 212-389
Cow position: chr27:4812843-4812659 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 160

Conread position: 213-367
Cow position: chr27:783773-783927 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 70, 22

Conread position: 213-374
Cow position: chr27:11672051-11672214 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 16, 118

Conread position: 213-389
Cow position: chr27:19577717-19577892 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 44, 23

Conread position: 214-380
Cow position: chr27:11693693-11693523 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 151

Conread position: 218-380
Cow position: chr27:9371551-9371709 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 129, 60

Conread position: 225-389
Cow position: chr27:2847947-2848113 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 58, 89

Conread position: 225-389
Cow position: chr27:12282812-12282647 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 50

Conread position: 226-380
Cow position: chr27:20765906-20765754 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 55, 0

Conread position: 227-379
Cow position: chr27:24446102-24445948 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 135

Conread position: 227-380
Cow position: chr27:26865064-26864910 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 135

Conread position: 227-380
Cow position: chr27:28206850-28207007 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 137

Conread position: 227-388
Cow position: chr27:25411461-25411302 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 227-389
Cow position: chr27:6073977-6074134 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 227-389
Cow position: chr27:26625181-26625345 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 43

Conread position: 227-389
Cow position: chr27:30362299-30362461 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 42

Conread position: 227-390
Cow position: chr27:21453022-21452851 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 142

Conread position: 229-380
Cow position: chr27:27141652-27141801 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 126

Conread position: 230-364
Cow position: chr27:28685202-28685335 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 64

Conread position: 231-380
Cow position: chr27:30185350-30185501 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 15

Conread position: 231-387
Cow position: chr27:25982650-25982491 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 133

Conread position: 231-388
Cow position: chr27:7958773-7958618 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 234-377
Cow position: chr27:26944956-26945104 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 236-389
Cow position: chr27:12650565-12650409 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 237-376
Cow position: chr27:31267216-31267075 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 46, 125

Conread position: 239-364
Cow position: chr27:16442534-16442408 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 44, 61

Conread position: 240-380
Cow position: chr27:24009865-24009730 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 73

Conread position: 241-357
Cow position: chr27:20866456-20866338 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 46, 0

Show alignments to all cow chromosomes.