Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-169 |
| Cow position: | chr10:2123496-2123329 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-235 |
| Cow position: | chr10:123933-124157 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:7283073-7282828 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 28, 236 |
| Conread position: | 1-243 |
| Cow position: | chr10:10581288-10581528 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 1-243 |
| Cow position: | chr10:19143723-19143484 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:19511219-19511460 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 198 |
| Conread position: | 1-243 |
| Cow position: | chr10:21486531-21486771 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:29846996-29846755 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:31523473-31523694 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:32650356-32650587 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:37060545-37060785 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:37769432-37769677 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 28, 236 |
| Conread position: | 1-243 |
| Cow position: | chr10:38345748-38345508 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:39041690-39041450 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr10:41566718-41566965 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 20, 238 |
| Conread position: | 1-243 |
| Cow position: | chr10:62409237-62408997 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-210 |
| Cow position: | chr10:24978520-24978307 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 57 |
| Conread position: | 2-243 |
| Cow position: | chr10:49310158-49310389 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 4-231 |
| Cow position: | chr10:38546603-38546379 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 5-203 |
| Cow position: | chr10:54127084-54127275 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 6-154 |
| Cow position: | chr10:42736125-42736274 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-242 |
| Cow position: | chr10:46191008-46191228 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 147 |
| Conread position: | 10-243 |
| Cow position: | chr10:4499340-4499563 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 13-243 |
| Cow position: | chr10:19715419-19715191 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 13-243 |
| Cow position: | chr10:22100868-22101096 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 13-243 |
| Cow position: | chr10:57990338-57990109 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 15-243 |
| Cow position: | chr10:34685524-34685750 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 15-243 |
| Cow position: | chr10:62777970-62778198 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 19-190 |
| Cow position: | chr10:1938209-1938035 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 19-243 |
| Cow position: | chr10:276225-276448 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 154 |
| Conread position: | 19-243 |
| Cow position: | chr10:29695879-29696096 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 19-243 |
| Cow position: | chr10:62216239-62216461 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 21-196 |
| Cow position: | chr10:183178-183352 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 21-227 |
| Cow position: | chr10:28116800-28116601 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 121, 79 |
| Conread position: | 21-243 |
| Cow position: | chr10:1375171-1375391 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 21-243 |
| Cow position: | chr10:14859618-14859832 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 21-243 |
| Cow position: | chr10:15862656-15862443 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 21-243 |
| Cow position: | chr10:21741114-21740894 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 21-243 |
| Cow position: | chr10:24299213-24298997 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 21-243 |
| Cow position: | chr10:34318623-34318407 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 21-243 |
| Cow position: | chr10:38538856-38538639 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 21-243 |
| Cow position: | chr10:38847011-38847228 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 21-243 |
| Cow position: | chr10:60489305-60489521 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 22-243 |
| Cow position: | chr10:25497990-25498210 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 142, 151 |
| Conread position: | 26-242 |
| Cow position: | chr10:4192574-4192358 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 131, 208 |
| Conread position: | 26-242 |
| Cow position: | chr10:25565600-25565392 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:280981-280765 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:11686021-11685809 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:14803474-14803689 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:21401028-21400817 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:21466894-21467110 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:39817706-39817495 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:41157095-41157305 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:41876562-41876773 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 146, 63 |
| Conread position: | 26-243 |
| Cow position: | chr10:47906421-47906635 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:51952963-51952747 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr10:54059707-54059497 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 6 |
| Conread position: | 26-243 |
| Cow position: | chr10:55092750-55092965 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 26-243 |
| Cow position: | chr10:57559908-57559697 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 28-243 |
| Cow position: | chr10:32577942-32578158 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 35, 207 |
| Conread position: | 28-243 |
| Cow position: | chr10:39179434-39179638 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 29-196 |
| Cow position: | chr10:8289612-8289779 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-240 |
| Cow position: | chr10:39881626-39881417 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 32-243 |
| Cow position: | chr10:25359046-25359254 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 7, 66 |
| Conread position: | 37-243 |
| Cow position: | chr10:58596156-58596359 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 44-243 |
| Cow position: | chr10:29633203-29633003 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 46, 82 |
| Conread position: | 62-230 |
| Cow position: | chr10:42628350-42628511 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 65-243 |
| Cow position: | chr10:61297008-61297185 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 93-243 |
| Cow position: | chr10:50018355-50018202 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 144 |
Show alignments to all cow chromosomes.