Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-183 |
| Cow position: | chr11:9607417-9607236 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 107 |
| Conread position: | 1-200 |
| Cow position: | chr11:52530282-52530480 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 1-240 |
| Cow position: | chr11:9158165-9157930 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 1-242 |
| Cow position: | chr11:10210706-10210471 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-243 |
| Cow position: | chr11:10846698-10846937 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr11:11987372-11987613 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 1-243 |
| Cow position: | chr11:12093011-12093254 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 234 |
| Conread position: | 1-243 |
| Cow position: | chr11:12359166-12358929 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr11:19103233-19102993 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr11:23876557-23876797 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr11:24392579-24392818 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr11:29669381-29669136 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 28, 235 |
| Conread position: | 1-243 |
| Cow position: | chr11:30125985-30125754 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 22, 119 |
| Conread position: | 1-243 |
| Cow position: | chr11:37477871-37477623 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 239 |
| Conread position: | 1-243 |
| Cow position: | chr11:43515380-43515138 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 1-243 |
| Cow position: | chr11:45110390-45110626 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 212, 18 |
| Conread position: | 1-243 |
| Cow position: | chr11:52462349-52462589 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-243 |
| Cow position: | chr11:53288197-53287962 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 1-243 |
| Cow position: | chr11:58133611-58133865 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 1-243 |
| Cow position: | chr11:72110706-72110468 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-243 |
| Cow position: | chr11:85394555-85394316 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 4-241 |
| Cow position: | chr11:31925457-31925691 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 4-243 |
| Cow position: | chr11:41171440-41171200 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 231 |
| Conread position: | 4-243 |
| Cow position: | chr11:77729268-77729033 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 5-237 |
| Cow position: | chr11:44496325-44496099 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 6-240 |
| Cow position: | chr11:24677319-24677548 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 187, 23 |
| Conread position: | 11-243 |
| Cow position: | chr11:44507434-44507662 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 12, 142 |
| Conread position: | 13-236 |
| Cow position: | chr11:53432506-53432282 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 13-242 |
| Cow position: | chr11:8262430-8262204 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 13-243 |
| Cow position: | chr11:19064986-19064757 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 13-243 |
| Cow position: | chr11:37093799-37093569 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 13-243 |
| Cow position: | chr11:65162272-65162043 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 141 |
| Conread position: | 14-243 |
| Cow position: | chr11:66725772-66725993 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 15-235 |
| Cow position: | chr11:29234376-29234159 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 143 |
| Conread position: | 15-243 |
| Cow position: | chr11:9660128-9659901 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 15-243 |
| Cow position: | chr11:25526843-25527073 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 15-243 |
| Cow position: | chr11:49076395-49076176 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 16-243 |
| Cow position: | chr11:24242716-24242938 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 19-231 |
| Cow position: | chr11:7394397-7394597 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 19-237 |
| Cow position: | chr11:81853319-81853103 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 112 |
| Conread position: | 19-243 |
| Cow position: | chr11:17108416-17108193 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 21-223 |
| Cow position: | chr11:38836145-38835943 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-235 |
| Cow position: | chr11:11126198-11126405 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 21-236 |
| Cow position: | chr11:87127115-87127332 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 21-240 |
| Cow position: | chr11:4028279-4028059 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 21-240 |
| Cow position: | chr11:4041788-4041570 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 21-240 |
| Cow position: | chr11:28055322-28055104 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-242 |
| Cow position: | chr11:26125656-26125436 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr11:9220742-9220518 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 136, 117 |
| Conread position: | 21-243 |
| Cow position: | chr11:28062962-28063183 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 21-243 |
| Cow position: | chr11:42428607-42428832 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 21-243 |
| Cow position: | chr11:67449767-67449990 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 176, 123 |
| Conread position: | 22-243 |
| Cow position: | chr11:8887877-8887657 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 22-243 |
| Cow position: | chr11:71328919-71329137 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 135, 44 |
| Conread position: | 24-243 |
| Cow position: | chr11:7687188-7687414 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 217 |
| Conread position: | 26-158 |
| Cow position: | chr11:15982923-15983055 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-189 |
| Cow position: | chr11:39798996-39798833 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-239 |
| Cow position: | chr11:63660307-63660093 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 113, 209 |
| Conread position: | 26-243 |
| Cow position: | chr11:1496783-1496576 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:3492292-3492505 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 116 |
| Conread position: | 26-243 |
| Cow position: | chr11:9736668-9736459 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:20921469-20921253 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:28230465-28230256 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:32450145-32450360 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:33195335-33195119 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:36744900-36744685 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:40777454-40777238 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 187, 59 |
| Conread position: | 26-243 |
| Cow position: | chr11:52418670-52418884 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:57628770-57628554 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr11:67847290-67847075 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 27-240 |
| Cow position: | chr11:76375189-76374978 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 28-172 |
| Cow position: | chr11:30304544-30304690 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-228 |
| Cow position: | chr11:37492364-37492165 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-243 |
| Cow position: | chr11:15998172-15998391 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 118, 210 |
| Conread position: | 29-243 |
| Cow position: | chr11:44157953-44157740 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 29-243 |
| Cow position: | chr11:54208907-54209120 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 37-241 |
| Cow position: | chr11:31414947-31414746 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 40-243 |
| Cow position: | chr11:34020200-34020401 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 47-243 |
| Cow position: | chr11:21466381-21466569 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 50-243 |
| Cow position: | chr11:7073162-7072980 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 50-243 |
| Cow position: | chr11:44861226-44861032 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 73, 185 |
| Conread position: | 62-243 |
| Cow position: | chr11:17220892-17220719 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 93-235 |
| Cow position: | chr11:17280890-17280751 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 110-243 |
| Cow position: | chr11:12351702-12351570 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 123, 0 |
Show alignments to all cow chromosomes.