Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-144 |
| Cow position: | chr13:13324120-13324264 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-242 |
| Cow position: | chr13:54283913-54284147 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 97 |
| Conread position: | 1-243 |
| Cow position: | chr13:1593836-1593596 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 1-243 |
| Cow position: | chr13:3654987-3654752 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr13:4940405-4940645 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr13:30302391-30302627 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr13:31613016-31612777 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-243 |
| Cow position: | chr13:32544264-32544506 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 23, 169 |
| Conread position: | 1-243 |
| Cow position: | chr13:34187365-34187129 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 1-243 |
| Cow position: | chr13:34868090-34868328 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 1-243 |
| Cow position: | chr13:35756545-35756799 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 33, 238 |
| Conread position: | 2-231 |
| Cow position: | chr13:30237498-30237718 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 4-242 |
| Cow position: | chr13:4481796-4482034 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 230 |
| Conread position: | 13-243 |
| Cow position: | chr13:15542794-15543024 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 9, 221 |
| Conread position: | 13-243 |
| Cow position: | chr13:15925054-15924824 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 15-243 |
| Cow position: | chr13:34143327-34143098 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 15-243 |
| Cow position: | chr13:34692503-34692721 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 18-243 |
| Cow position: | chr13:13046486-13046260 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 19-211 |
| Cow position: | chr13:2232009-2232199 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 19-241 |
| Cow position: | chr13:30657625-30657404 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 19-243 |
| Cow position: | chr13:3276495-3276716 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 19-243 |
| Cow position: | chr13:9043847-9044069 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 19-243 |
| Cow position: | chr13:62328243-62328023 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 21-242 |
| Cow position: | chr13:46733006-46732794 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 21-243 |
| Cow position: | chr13:6668786-6668565 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr13:15521176-15520955 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr13:32738470-32738259 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 21-243 |
| Cow position: | chr13:34043025-34042806 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 22-235 |
| Cow position: | chr13:48356673-48356878 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 22-243 |
| Cow position: | chr13:33825398-33825169 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 131, 220 |
| Conread position: | 24-243 |
| Cow position: | chr13:34936480-34936697 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 26, 130 |
| Conread position: | 25-195 |
| Cow position: | chr13:676307-676477 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-243 |
| Cow position: | chr13:31734730-31734522 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 26-239 |
| Cow position: | chr13:2389453-2389238 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 113, 210 |
| Conread position: | 26-243 |
| Cow position: | chr13:2297453-2297240 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 26-243 |
| Cow position: | chr13:4872422-4872638 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr13:21840853-21840636 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 26-243 |
| Cow position: | chr13:30245391-30245175 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr13:32986701-32986488 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 26-243 |
| Cow position: | chr13:35029866-35030074 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 86, 108 |
| Conread position: | 26-243 |
| Cow position: | chr13:50108810-50109025 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 26-243 |
| Cow position: | chr13:53834115-53834331 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 27-232 |
| Cow position: | chr13:34912020-34911817 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 27-243 |
| Cow position: | chr13:17307829-17308039 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 29-190 |
| Cow position: | chr13:49973063-49973224 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-243 |
| Cow position: | chr13:20543012-20542802 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 36-243 |
| Cow position: | chr13:33336972-33336764 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 69, 199 |
| Conread position: | 40-243 |
| Cow position: | chr13:2909087-2908885 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 40-243 |
| Cow position: | chr13:33928189-33928000 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 47-243 |
| Cow position: | chr13:31831973-31832167 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 66-243 |
| Cow position: | chr13:3058610-3058434 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 71-213 |
| Cow position: | chr13:61951581-61951721 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 91-243 |
| Cow position: | chr13:34326268-34326117 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 142, 0 |
Show alignments to all cow chromosomes.