Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-216 |
| Cow position: | chr14:13272458-13272671 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-223 |
| Cow position: | chr14:41755068-41755289 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 1-234 |
| Cow position: | chr14:44225608-44225841 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 1-242 |
| Cow position: | chr14:16274102-16273862 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 157, 21 |
| Conread position: | 1-243 |
| Cow position: | chr14:2283179-2283423 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 19, 235 |
| Conread position: | 1-243 |
| Cow position: | chr14:5528262-5528502 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr14:7471571-7471811 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr14:17684589-17684830 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 1-243 |
| Cow position: | chr14:20781654-20781891 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 1-243 |
| Cow position: | chr14:28994661-28994420 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 1-243 |
| Cow position: | chr14:45160059-45160300 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 1-243 |
| Cow position: | chr14:45833353-45833599 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 1-243 |
| Cow position: | chr14:46083825-46084060 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 1-243 |
| Cow position: | chr14:50109775-50110015 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 2-243 |
| Cow position: | chr14:45205259-45205508 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 8 |
| Conread position: | 2-243 |
| Cow position: | chr14:50134112-50134345 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-243 |
| Cow position: | chr14:35387936-35387695 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 8-243 |
| Cow position: | chr14:34774806-34775030 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 11-228 |
| Cow position: | chr14:38145844-38146060 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 12-242 |
| Cow position: | chr14:31886687-31886906 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 13-242 |
| Cow position: | chr14:22032477-22032248 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 13-243 |
| Cow position: | chr14:11154948-11154718 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 13-243 |
| Cow position: | chr14:19329061-19328831 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 15-235 |
| Cow position: | chr14:38533087-38532870 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 142, 29 |
| Conread position: | 15-236 |
| Cow position: | chr14:44261883-44261662 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 7, 86 |
| Conread position: | 15-242 |
| Cow position: | chr14:44130136-44130361 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 19-242 |
| Cow position: | chr14:45712765-45712541 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 166, 16 |
| Conread position: | 21-240 |
| Cow position: | chr14:11467814-11468032 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 21-242 |
| Cow position: | chr14:31607705-31607484 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 22 |
| Conread position: | 21-243 |
| Cow position: | chr14:14309844-14309629 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 21-243 |
| Cow position: | chr14:17001833-17001620 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 21-243 |
| Cow position: | chr14:22018616-22018840 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 144, 214 |
| Conread position: | 21-243 |
| Cow position: | chr14:37223116-37223337 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 21-243 |
| Cow position: | chr14:40170465-40170239 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 129, 217 |
| Conread position: | 21-243 |
| Cow position: | chr14:40338928-40339145 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 21-243 |
| Cow position: | chr14:43552635-43552855 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 21-243 |
| Cow position: | chr14:44376653-44376871 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 21-243 |
| Cow position: | chr14:44551269-44551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 21-243 |
| Cow position: | chr14:44685261-44685483 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 213 |
| Conread position: | 21-243 |
| Cow position: | chr14:45079751-45079969 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 21-243 |
| Cow position: | chr14:48255098-48254877 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 155, 213 |
| Conread position: | 22-236 |
| Cow position: | chr14:35928392-35928610 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 73, 172 |
| Conread position: | 22-242 |
| Cow position: | chr14:13302246-13302465 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 22-243 |
| Cow position: | chr14:1499969-1500189 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 201, 13 |
| Conread position: | 22-243 |
| Cow position: | chr14:14422792-14422575 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 22-243 |
| Cow position: | chr14:45850443-45850663 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 26-181 |
| Cow position: | chr14:10561851-10562006 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-182 |
| Cow position: | chr14:33394584-33394428 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-225 |
| Cow position: | chr14:17241460-17241653 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 26-243 |
| Cow position: | chr14:749795-750004 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 26-243 |
| Cow position: | chr14:9044784-9045000 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 26-243 |
| Cow position: | chr14:23256576-23256796 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 120, 211 |
| Conread position: | 26-243 |
| Cow position: | chr14:30585717-30585501 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr14:45672824-45672610 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 27-243 |
| Cow position: | chr14:17492231-17492022 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 28-235 |
| Cow position: | chr14:47623792-47623997 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 28-243 |
| Cow position: | chr14:15277638-15277416 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 34, 213 |
| Conread position: | 29-208 |
| Cow position: | chr14:42404170-42404347 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 29-243 |
| Cow position: | chr14:29048672-29048463 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 29-243 |
| Cow position: | chr14:41085585-41085373 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 29-243 |
| Cow position: | chr14:44580169-44580377 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 36-230 |
| Cow position: | chr14:30597146-30596945 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 40-243 |
| Cow position: | chr14:36967491-36967694 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 124, 194 |
| Conread position: | 44-243 |
| Cow position: | chr14:23690989-23690789 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 120, 191 |
| Conread position: | 45-241 |
| Cow position: | chr14:45767247-45767439 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 123, 22 |
| Conread position: | 47-243 |
| Cow position: | chr14:13660752-13660552 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 23, 191 |
| Conread position: | 47-243 |
| Cow position: | chr14:44856185-44855990 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 58-243 |
| Cow position: | chr14:13778114-13778299 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 10, 176 |
| Conread position: | 62-243 |
| Cow position: | chr14:7831279-7831104 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 62-243 |
| Cow position: | chr14:16920427-16920247 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 66-243 |
| Cow position: | chr14:45916660-45916835 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 67-243 |
| Cow position: | chr14:13326849-13326674 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 100-243 |
| Cow position: | chr14:44421851-44421992 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
Show alignments to all cow chromosomes.