Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-221 |
| Cow position: | chr16:14666938-14666719 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-223 |
| Cow position: | chr16:1568597-1568379 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-240 |
| Cow position: | chr16:25440464-25440706 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 1-240 |
| Cow position: | chr16:25458625-25458383 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 1-243 |
| Cow position: | chr16:31604-31838 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 187 |
| Conread position: | 1-243 |
| Cow position: | chr16:1430077-1430317 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 9 |
| Conread position: | 1-243 |
| Cow position: | chr16:2728463-2728223 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr16:5660715-5660950 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 27, 139 |
| Conread position: | 1-243 |
| Cow position: | chr16:7676845-7676604 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 1-243 |
| Cow position: | chr16:8817255-8817015 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr16:9776978-9777221 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 234 |
| Conread position: | 1-243 |
| Cow position: | chr16:12539080-12538835 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 23, 236 |
| Conread position: | 1-243 |
| Cow position: | chr16:15491562-15491797 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-243 |
| Cow position: | chr16:15565602-15565840 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1-243 |
| Cow position: | chr16:23253650-23253414 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-243 |
| Cow position: | chr16:24881837-24881598 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr16:28472246-28472006 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr16:31593056-31592817 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-243 |
| Cow position: | chr16:25157367-25157127 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 4-243 |
| Cow position: | chr16:29031769-29032006 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 75 |
| Conread position: | 8-243 |
| Cow position: | chr16:25340827-25341061 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 225, 0 |
| Conread position: | 13-232 |
| Cow position: | chr16:40887407-40887182 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 13-243 |
| Cow position: | chr16:14422577-14422804 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 133, 99 |
| Conread position: | 13-243 |
| Cow position: | chr16:15183666-15183896 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 225 |
| Conread position: | 15-243 |
| Cow position: | chr16:10437120-10437347 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 223, 0 |
| Conread position: | 19-243 |
| Cow position: | chr16:25084492-25084712 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 167, 36 |
| Conread position: | 19-243 |
| Cow position: | chr16:29676438-29676216 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 21-205 |
| Cow position: | chr16:5589069-5589251 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 117 |
| Conread position: | 21-232 |
| Cow position: | chr16:29982143-29982348 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 120 |
| Conread position: | 21-243 |
| Cow position: | chr16:408163-407942 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr16:2484268-2484047 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 126, 121 |
| Conread position: | 21-243 |
| Cow position: | chr16:9929425-9929646 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 135, 70 |
| Conread position: | 21-243 |
| Cow position: | chr16:15369310-15369523 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 21-243 |
| Cow position: | chr16:40297306-40297086 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 21-243 |
| Cow position: | chr16:43898399-43898179 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 21-243 |
| Cow position: | chr16:51685318-51685533 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 22-235 |
| Cow position: | chr16:42051470-42051272 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 22-243 |
| Cow position: | chr16:10204545-10204324 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 201, 208 |
| Conread position: | 22-243 |
| Cow position: | chr16:11052043-11052262 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 22-243 |
| Cow position: | chr16:16687742-16687959 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 22-243 |
| Cow position: | chr16:19713978-19713758 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 22-243 |
| Cow position: | chr16:32935024-32935231 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 22-243 |
| Cow position: | chr16:54647204-54647416 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 23-243 |
| Cow position: | chr16:18688247-18688039 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 23-243 |
| Cow position: | chr16:49257700-49257478 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 78, 186 |
| Conread position: | 24-243 |
| Cow position: | chr16:42740542-42740332 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 24-243 |
| Cow position: | chr16:49236237-49236025 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 26-242 |
| Cow position: | chr16:4303596-4303381 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr16:5918357-5918574 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 26-243 |
| Cow position: | chr16:6942496-6942712 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr16:10376389-10376181 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 26-243 |
| Cow position: | chr16:21185155-21185371 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 26-243 |
| Cow position: | chr16:28171485-28171269 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 131, 35 |
| Conread position: | 26-243 |
| Cow position: | chr16:32605701-32605917 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 27-243 |
| Cow position: | chr16:2239852-2239641 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-243 |
| Cow position: | chr16:7905520-7905732 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 37-207 |
| Cow position: | chr16:31376342-31376179 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 40-242 |
| Cow position: | chr16:6549633-6549433 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 40-243 |
| Cow position: | chr16:20255419-20255221 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 162 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 47-243 |
| Cow position: | chr16:36282291-36282488 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 101, 188 |
| Conread position: | 49-243 |
| Cow position: | chr16:26662650-26662840 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 52-243 |
| Cow position: | chr16:36232699-36232515 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 54-218 |
| Cow position: | chr16:39818526-39818692 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 62-216 |
| Cow position: | chr16:5483412-5483260 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 62-240 |
| Cow position: | chr16:27734895-27734718 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 62-243 |
| Cow position: | chr16:23982221-23982401 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 170, 0 |
Show alignments to all cow chromosomes.