Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-235 |
| Cow position: | chr17:2578991-2579220 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-235 |
| Cow position: | chr17:18104254-18104021 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr17:3643409-3643170 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr17:4059533-4059774 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 174, 20 |
| Conread position: | 1-243 |
| Cow position: | chr17:20666303-20666060 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 18, 234 |
| Conread position: | 1-243 |
| Cow position: | chr17:25737090-25737329 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-216 |
| Cow position: | chr17:181044-181257 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 5-243 |
| Cow position: | chr17:4294818-4295044 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 5-243 |
| Cow position: | chr17:14893586-14893827 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 13-243 |
| Cow position: | chr17:11088285-11088055 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 150 |
| Conread position: | 13-243 |
| Cow position: | chr17:13929110-13929334 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 124 |
| Conread position: | 13-243 |
| Cow position: | chr17:16860133-16859890 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 234 |
| Conread position: | 15-241 |
| Cow position: | chr17:27345247-27345469 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 15-243 |
| Cow position: | chr17:2286816-2287043 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 15-243 |
| Cow position: | chr17:16889570-16889791 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 15-243 |
| Cow position: | chr17:19609460-19609230 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 221 |
| Conread position: | 18-243 |
| Cow position: | chr17:44853477-44853262 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 19-243 |
| Cow position: | chr17:55237-55016 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 19-243 |
| Cow position: | chr17:1284313-1284091 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 19-243 |
| Cow position: | chr17:19269923-19269696 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 19-243 |
| Cow position: | chr17:22131384-22131608 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 145, 220 |
| Conread position: | 21-235 |
| Cow position: | chr17:12670890-12670679 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 119 |
| Conread position: | 21-243 |
| Cow position: | chr17:4081096-4081319 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 29, 213 |
| Conread position: | 21-243 |
| Cow position: | chr17:15322276-15322497 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 22-159 |
| Cow position: | chr17:3710751-3710614 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-229 |
| Cow position: | chr17:18302322-18302120 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 22-240 |
| Cow position: | chr17:14326051-14325830 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 22-243 |
| Cow position: | chr17:15435241-15435457 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 23-232 |
| Cow position: | chr17:31200619-31200409 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 24-235 |
| Cow position: | chr17:15370531-15370736 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 26-180 |
| Cow position: | chr17:31768820-31768666 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-230 |
| Cow position: | chr17:6119601-6119805 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-242 |
| Cow position: | chr17:228845-228636 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:1383361-1383145 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:2249131-2248915 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:2261567-2261776 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:8208560-8208776 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 26-243 |
| Cow position: | chr17:9653999-9653783 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:11782821-11783037 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:14217574-14217358 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:15157502-15157293 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:22160366-22160582 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:24633407-24633623 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 127, 119 |
| Conread position: | 26-243 |
| Cow position: | chr17:24780498-24780714 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr17:43987970-43988204 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 28-242 |
| Cow position: | chr17:20401128-20401347 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 36-243 |
| Cow position: | chr17:6259164-6259367 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 37-243 |
| Cow position: | chr17:28109557-28109752 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 40-243 |
| Cow position: | chr17:22430013-22429816 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 42-243 |
| Cow position: | chr17:249395-249588 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 45-235 |
| Cow position: | chr17:13857305-13857114 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 46-243 |
| Cow position: | chr17:6089691-6089495 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 47-243 |
| Cow position: | chr17:32024724-32024529 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 51-196 |
| Cow position: | chr17:1945653-1945798 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 113, 122 |
| Conread position: | 53-243 |
| Cow position: | chr17:35591702-35591881 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 65-243 |
| Cow position: | chr17:2173367-2173543 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 70-243 |
| Cow position: | chr17:23857548-23857366 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 10, 173 |
| Conread position: | 80-243 |
| Cow position: | chr17:20088251-20088087 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 88, 155 |
| Conread position: | 99-231 |
| Cow position: | chr17:2737902-2738033 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.