Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-235 |
| Cow position: | chr18:16660363-16660137 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-235 |
| Cow position: | chr18:54002138-54002362 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-240 |
| Cow position: | chr18:9187136-9186891 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 1-242 |
| Cow position: | chr18:25349674-25349912 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 6 |
| Conread position: | 1-243 |
| Cow position: | chr18:14129929-14130168 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr18:16176972-16176732 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr18:23797285-23797525 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr18:27838663-27838429 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr18:28974263-28974026 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr18:33335503-33335745 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 1-243 |
| Cow position: | chr18:37504700-37504939 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr18:41841191-41840951 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-243 |
| Cow position: | chr18:51660052-51660291 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 21, 143 |
| Conread position: | 1-243 |
| Cow position: | chr18:54172209-54171969 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 2-224 |
| Cow position: | chr18:42244912-42244699 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 182, 94 |
| Conread position: | 13-243 |
| Cow position: | chr18:14415623-14415853 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 225 |
| Conread position: | 13-243 |
| Cow position: | chr18:36507977-36508207 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 220 |
| Conread position: | 15-196 |
| Cow position: | chr18:29236426-29236607 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-243 |
| Cow position: | chr18:1520775-1521003 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 15-243 |
| Cow position: | chr18:11275442-11275226 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 19-232 |
| Cow position: | chr18:23944720-23944507 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-243 |
| Cow position: | chr18:43147274-43147050 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 215 |
| Conread position: | 21-243 |
| Cow position: | chr18:35287907-35288124 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 21-243 |
| Cow position: | chr18:45958356-45958568 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 21-243 |
| Cow position: | chr18:54024702-54024482 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 22-243 |
| Cow position: | chr18:48221533-48221751 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 22-243 |
| Cow position: | chr18:51257641-51257857 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 23-243 |
| Cow position: | chr18:51480495-51480714 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 26-182 |
| Cow position: | chr18:23746314-23746158 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-241 |
| Cow position: | chr18:33953909-33953696 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 26-243 |
| Cow position: | chr18:16078363-16078577 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 26-243 |
| Cow position: | chr18:19352036-19352260 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 59, 215 |
| Conread position: | 26-243 |
| Cow position: | chr18:37586005-37585789 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr18:44621415-44621633 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 138, 202 |
| Conread position: | 26-243 |
| Cow position: | chr18:47741676-47741892 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr18:55089267-55089051 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 29-243 |
| Cow position: | chr18:33358526-33358742 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 211 |
| Conread position: | 29-243 |
| Cow position: | chr18:51310248-51310457 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 37-193 |
| Cow position: | chr18:40345625-40345471 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 37-243 |
| Cow position: | chr18:33268513-33268715 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 38-243 |
| Cow position: | chr18:22602157-22602361 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 118, 109 |
| Conread position: | 40-243 |
| Cow position: | chr18:2020009-2019809 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 40-243 |
| Cow position: | chr18:47719897-47719691 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 128, 197 |
| Conread position: | 47-243 |
| Cow position: | chr18:32293456-32293649 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 47-243 |
| Cow position: | chr18:39748263-39748456 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 49-243 |
| Cow position: | chr18:40478066-40478257 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 50-243 |
| Cow position: | chr18:17992879-17992688 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 53-243 |
| Cow position: | chr18:35335170-35335363 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 111, 183 |
| Conread position: | 59-232 |
| Cow position: | chr18:27986720-27986893 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-243 |
| Cow position: | chr18:19540179-19540001 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 68 |
| Conread position: | 62-243 |
| Cow position: | chr18:32651690-32651871 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 86-243 |
| Cow position: | chr18:51464751-51464597 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 86-243 |
| Cow position: | chr18:51610726-51610880 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.