Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-178 |
| Cow position: | chr21:41952895-41953073 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-240 |
| Cow position: | chr21:21948083-21947849 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 1-243 |
| Cow position: | chr21:1190756-1190996 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr21:3778479-3778722 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 1-243 |
| Cow position: | chr21:30600199-30599961 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr21:40272097-40271863 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 1-243 |
| Cow position: | chr21:47947833-47948063 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 1-243 |
| Cow position: | chr21:48115822-48116062 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 6-243 |
| Cow position: | chr21:4183261-4183492 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 8-140 |
| Cow position: | chr21:2542151-2542020 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 13-236 |
| Cow position: | chr21:145644-145868 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 13-241 |
| Cow position: | chr21:10566403-10566630 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 8, 44 |
| Conread position: | 13-243 |
| Cow position: | chr21:2884010-2883780 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 13-243 |
| Cow position: | chr21:7267808-7267582 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 8, 73 |
| Conread position: | 13-243 |
| Cow position: | chr21:31559923-31559701 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 145 |
| Conread position: | 14-243 |
| Cow position: | chr21:34292744-34292973 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 15-183 |
| Cow position: | chr21:29086219-29086383 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 15-243 |
| Cow position: | chr21:4222968-4222733 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 19-243 |
| Cow position: | chr21:2530395-2530172 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 145, 154 |
| Conread position: | 19-243 |
| Cow position: | chr21:3426217-3426443 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 156, 66 |
| Conread position: | 19-243 |
| Cow position: | chr21:4076578-4076802 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 145, 217 |
| Conread position: | 19-243 |
| Cow position: | chr21:23860514-23860737 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 19-243 |
| Cow position: | chr21:47939210-47939434 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-243 |
| Cow position: | chr21:4083388-4083604 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 21-243 |
| Cow position: | chr21:10849813-10850034 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr21:18692486-18692713 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 21-243 |
| Cow position: | chr21:21516944-21517157 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 21-243 |
| Cow position: | chr21:33251125-33251346 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr21:34055180-34054958 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 83 |
| Conread position: | 21-243 |
| Cow position: | chr21:39424803-39425017 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 22-174 |
| Cow position: | chr21:35089437-35089588 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 22-240 |
| Cow position: | chr21:2769717-2769511 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 22-243 |
| Cow position: | chr21:1292440-1292218 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 22-243 |
| Cow position: | chr21:35596115-35596322 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 25-223 |
| Cow position: | chr21:4590220-4590031 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 25-243 |
| Cow position: | chr21:2501674-2501892 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 214 |
| Conread position: | 26-170 |
| Cow position: | chr21:2454457-2454600 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 26-182 |
| Cow position: | chr21:19609854-19610010 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-208 |
| Cow position: | chr21:39580460-39580642 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-241 |
| Cow position: | chr21:17572668-17572876 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 26-242 |
| Cow position: | chr21:28529804-28529590 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 26-242 |
| Cow position: | chr21:46915330-46915540 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 26-243 |
| Cow position: | chr21:2510395-2510609 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 26-243 |
| Cow position: | chr21:4090388-4090605 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 76, 72 |
| Conread position: | 26-243 |
| Cow position: | chr21:5016292-5016074 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 169, 135 |
| Conread position: | 26-243 |
| Cow position: | chr21:11453915-11453699 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr21:12056259-12056043 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr21:26638718-26638509 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 26-243 |
| Cow position: | chr21:26819275-26819060 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 26-243 |
| Cow position: | chr21:27708500-27708716 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr21:37044660-37044867 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 27-243 |
| Cow position: | chr21:2476768-2476556 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 28-243 |
| Cow position: | chr21:3615035-3615246 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 28-243 |
| Cow position: | chr21:13124257-13124041 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 5, 69 |
| Conread position: | 29-243 |
| Cow position: | chr21:11505328-11505541 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 32-194 |
| Cow position: | chr21:23811657-23811816 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 38-232 |
| Cow position: | chr21:2415995-2416183 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 40-243 |
| Cow position: | chr21:358773-358970 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 40-243 |
| Cow position: | chr21:2716917-2716727 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 44-243 |
| Cow position: | chr21:2789226-2789037 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 45-242 |
| Cow position: | chr21:9891370-9891564 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 47-243 |
| Cow position: | chr21:34259453-34259258 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 49-231 |
| Cow position: | chr21:2674876-2674694 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-243 |
| Cow position: | chr21:30561566-30561756 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 181, 0 |
Show alignments to all cow chromosomes.